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SingleReadGroupFilter

Only use reads from the specified read group.

Category Read Filters


Overview


Command-line Arguments

SingleReadGroupFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For details, see the list further down below the table.

Name Type Default value Summary
Required
--read_group_to_keep String NA The name of the read group to keep, filtering out all others

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

--read_group_to_keep / -goodRG ( required String )

The name of the read group to keep, filtering out all others.


See also Guide Index | Technical Documentation Index | Support Forum

GATK version 2.5-2-gdb4546e built at 2013/05/01 09:32:36.