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SampleFilter

Filter out all reads except those with this sample

Category Read Filters


Overview


Command-line Arguments

SampleFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For details, see the list further down below the table.

Name Type Default value Summary
Required
--sample_to_keep Set NA The name of the sample(s) to keep, filtering out all others

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

--sample_to_keep / -goodSM ( required Set )

The name of the sample(s) to keep, filtering out all others.


See also Guide Index | Technical Documentation Index | Support Forum

GATK version 2.5-2-gdb4546e built at 2013/05/01 09:32:36.