Documentation

SampleFilter

Filter out all reads except those with this sample

Category Read Filters


Overview


Command-line Arguments

SampleFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s) Default value Summary
Required Parameters
--sample_to_keep
 -goodSM
NA The name of the sample(s) to keep, filtering out all others

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.


--sample_to_keep / -goodSM

The name of the sample(s) to keep, filtering out all others

R Set


See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA