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ReadStrandFilter

Filters out reads whose strand is negative or positive

Category Read Filters


Overview


Command-line Arguments

ReadStrandFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For details, see the list further down below the table.

Name Type Default value Summary
Optional
--filterPositive boolean false Discard reads on the forward strand

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

--filterPositive / -fp ( boolean with default value false )

Discard reads on the forward strand.


See also Guide Index | Technical Documentation Index | Support Forum

GATK version 2.5-2-gdb4546e built at 2013/05/01 09:32:36.