MaxInsertSizeFilter

Filter out reads that exceed a given max insert size

Category Read Filters


Overview


Command-line Arguments

MaxInsertSizeFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s) Default value Summary
Optional Parameters
--maxInsertSize
 -maxInsert
1000000 Discard reads with insert size greater than the specified value, defaults to 1000000

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.


--maxInsertSize / -maxInsert

Discard reads with insert size greater than the specified value, defaults to 1000000

int  1000000  [ [ -?  ? ] ]


See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA