Filter out reads that exceed a given max insert size
This table summarizes the command-line arguments that are specific to this tool. For details, see the list further down below the table.
|--maxInsertSize||int||1000000||Discard reads with insert size greater than the specified value, defaults to 1000000|
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
Discard reads with insert size greater than the specified value, defaults to 1000000.
GATK version 2.8-1-g2a26ec9 built at 2013/12/06 16:54:02.