SNP Map Table: C3H/HeJ v.s. DBA/2J

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:C3H/HeJ	Gt:DBA/2J
Chr1
	4.4 P
		16.MMHAP23FRF7.seq	random	4.4 P
			66	C	T
			149	G	T
	5.5 P
		D1Mit242.1	genetic marker	5.5 P
			62	G	A
	6.05 F
		15.MMHAP20FRE9.seq	random	5.5 F to 6.6 P
			72	A	G
			96	T	C
	15.85 F
		13.MMHAP88FRE7.seq	random	15.3 F to 16.4 F
			35	T	G
	17.5 F
		05.MMHAP9FLB2.seq	random	17.5 F
			108	T	C
	37.2 F
		L23637	est	37.2 F
			54	C	T
	49.75 F
		31.MMHAP17FRC10.seq	random	49.2 P to 50.3 F
			148	G	A
			165	G	C
		MHAa21c3.seq	random	49.2 P to 50.3 F
			72	C	A
	54.6 F
		41.MMHAP6FLF5.seq	random	54.6 F
			123	A	G
	57.9 F
		19.MMHAP66FLG1.seq	random	57.9 F
			66	A	G
		MHAa27a6.seq	random	57.9 F
			67	C	T
	73.2 P
		07.MMHAP61FRC7.seq	random	73.2 P
			117	T	G
		20.MHAa96b8.seq	random	73.2 P
			96	T	C
		D1Mit31.1	genetic marker	73.2 P
			26	C	T
	75.4 F
		43.MMHAP26FRG10.seq	random	75.4 F
			106	A	G
	82.0 F
		29.MMHAP6FRB11.seq	random	82.0 F
			130	G	A
		D1Mit266.1	genetic marker	82.0 F
			23	G	A
	85.2 F
		D1Mit57.1	genetic marker	85.2 F
			26	G	A
	85.2 P
		D1Mit539.1	genetic marker	85.2 P
			84	C	T
		D1Mit539.2	genetic marker	85.2 P
			25	A	G
	91.75515 F
		12.MMHAP37FRD9.seq	random	91.7103 P to 91.8 F
			21	G	A
			93	G	A
			121	A	G
	91.8 F
		X04648	est	91.8 F
			75	A	C
			90	G	A
	91.8 P
		D1Mit455.1	genetic marker	91.8 P
			32	C	T
			120	G	A
			194	C	T
	94.0 P
		D1Mit540.1	genetic marker	94.0 P
			54	A	G
	101.6 F
		21.MMHAP97FRG9.seq	random	101.6 F
			66	A	G
	113.7 F
		X83202	est	113.7 F
			23	T	C
Chr2
	7.7 P
		U22339	est	7.7 P
			140	G	C
	38.3 F
		37.MHAa90d1.seq	random	38.3 F
			48	G	A
		41.MMHAP25FRF11.seq	random	38.3 F
			69	G	A
	50.3 F
		33.MMHAP63FLC6.seq	random	50.3 F
			52	A	G
	50.3 P
		Results_ER_9_5_95_41.seq	random	50.3 P
			170	G	A
	51.4 F
		01.MMHAP26FRA7.seq	random	50.3 P to 52.5 F
			68	A	T
	51.95 F
		D38218	est	52.5 P to 51.4 F
			38	T	C
	52.5 F
		44.MMHAP79FLG5.seq	random	52.5 P to 52.5 F
			164	A	G
		46.MMHAP59FLH4.seq	random	52.5 F
			118	A	G
	55.7 F
		38.MMHAP33FRE11.seq	random	55.7 F
			128	G	A
	61.2 F
		09.MMHAP61FLC3.seq	random	61.2 F
			77	C	T
	66.7 F
		13.MMHAP61FRE7.seq	random	66.7 F
			46	C	A
		27.MMHAP59FLA6.seq	random	66.7 F
			65	A	G
			138	A	G
		D2Mit404.1	genetic marker	66.7 F
			24	A	G
	70.58879 F
		M55669	est	74.47758 P to 66.7 F
			53	G	A
	72.1 F
		D2Mit284.4	genetic marker	72.1 F
			51	T	A
	73.2 F
		17.MMHAP71FRF8.seq	random	73.2 F
			30	C	T
			77	C	T
			79	A	G
			112	G	A
	74.3 P
		U27177	est	74.3 P
			177	A	G
Chr3
	2.2 F
		M63554	est	2.2 F
			158	C	T
	4.4 F
		45.MMHAP35FRG12.seq	random	4.4 P to 4.4 F
			45	C	T
	9.679 P
		11.MMHAP26FRD8.seq	random	9.679 P
			99	T	C
			125	T	G
		L11316	est	9.679 P
			158	G	A
	16.4 F
		43.MMHAP97FRG10.seq	random	16.4 F
			106	G	T
	17.5 P
		08.MMHAP18FRC8.seq	random	17.5 P
			103	C	T
		26.MMHAP20FRA11.seq	random	17.5 P
			38	T	G
			120	C	T
		44.MMHAP7FLG5.seq	random	17.5 P
			28	G	A
	25.1 F
		35.MMHAP59FLD5.seq	random	25.1 F
			58	A	G
	29.5 P
		D3Mit281.1	genetic marker	29.5 P
			88	G	A
			118	C	T
	33.9 F
		D3Mit28.2	genetic marker	33.9 F
			27	T	C
		U04541	est	33.9 F to 33.9 P
			90	A	G
	40.4 F
		48.MMHAP22FRH12.seq	random	40.4 P to 40.4 F
			56	C	A
	41.5 F
		M65034	est	41.5 F
			27	T	C
			79	A	C
	42.6 F
		X92122	est	42.6 P to 42.6 F
			49	A	G
	49.2 F
		D3Mit160.2	genetic marker	49.2 F
			82	G	A
		M63961	est	49.2 F
			46	G	A
			124	A	G
	50.85 F
		MHAa82d4.seq	random	51.4 F to 50.3 P
			115	C	G
	58.45 F
		27.MMHAP69FRA12.seq	random	57.9 F to 59.0 F
			66	T	G
	64.5 P
		D3Mit323.1	genetic marker	64.5 P
			19	T	A
Chr4
	30.6 P
		17.MMHAP91FLF2.seq	random	30.6 P
			20	A	G
			126	A	T
	31.7 F
		33.MMHAP15FLC6.seq	random	31.7 F
			87	A	T
		X03687	est	31.7 F to 31.7 P
			36	T	C
			108	T	G
	35 P
		13.MMHAP64FLE1.seq	random	33.9 P to 36.1 P
			30	G	A
			81	T	A
	45.9 F
		MHAa54g5.seq	random	45.9 F
			89	A	G
	47.55 F
		01.MMHAP71FRA7.seq	random	47.0 F to 48.1 F
			111	C	T
	52.5 F
		37.MMHAP88FRE10.seq	random	52.5 F
			138	T	C
	53.6 F
		41.MMHAP25FLF5.seq	random	53.6 F
			104	T	G
	71.0 P
		21.MMHAP88FLG3.seq	random	71.0 P
			57	A	G
		27.MMHAP7FRA12.seq	random	71.0 P
			64	A	G
		42.MMHAP20FRF12.seq	random	71.0 P
			105	T	A
Chr5
	3.85 F
		29.MMHAP35FLB5.seq	random	3.3 F to 4.4 F
			77	A	T
	4.4 F
		D5Mit179.1	genetic marker	4.4 F
			46	A	C
			88	C	T
	5.5 F
		36.MMHAP17FRD12.seq	random	5.5 F
			67	G	A
			157	A	G
	8.7 F
		32.MMHAP62FLC5.seq	random	8.7 F
			96	C	T
	14.2 F
		MHAa54a9.seq	random	14.2 F
			88	A	G
	16.95 F
		06.MMHAP9FLB3.seq	random	16.4 F to 17.5 F
			34	G	T
		MHAa87h2.seq	random	16.4 F to 17.5 F
			123	C	A
	25.65 F
		MHAa35a12.seq	random	25.1 F to 26.2 F
			126	T	C
	37.75 F
		L23801	est	37.2 P to 38.3 F
			135	T	G
	38.3 P
		D5Mit115	genetic marker	38.3 P
			33	T	A
	40.4 F
		12.MMHAP17FRD9.seq	random	40.4 F
			23	T	C
	48.65 F
		08.MMHAP59FRC8.seq	random	48.1 F to 49.2 F
			57	A	G
	49.23689 P
		mHAa21e7.seq	random	54.77378 P to 43.7 P
			154	G	A
	74.3 F
		22.MMHAP91FLH1.seq	random	74.3 F
			28	G	A
Chr6
	3.3 F
		06.MMHAP84FRB9.seq	random	3.3 F to 3.3 P
			64	A	G
		M60493	est	3.3 F
			110	A	G
	3.3 P
		03.MMHAP86FRA9.seq	random	3.3 P
			38	A	C
	6.6 F
		MHAa75g2.seq	random	6.6 F
			42	T	C
			114	G	A
			133	A	C
	7.7 F
		32.MHAa55g8.seq	random	7.7 F
			133	T	A
	31.7 F
		28.MMHAP27FRB10.seq	random	31.7 F
			34	C	G
	41.5 P
		23.MMHAP7FLH2.seq	random	41.5 P
			117	C	T
	45.9 P
		15.MHAa10f3.seq	random	45.9 P
			90	C	T
	47.0 F
		28.MMHAP6FRB10.seq	random	47.0 F
			62	T	C
			118	A	C
		30.MMHAP30FLB6.seq	random	47.0 F
			131	C	T
		32.MMHAP4FRC11.seq	random	47.0 F
			119	C	T
	62.85 F
		45.MMHAP94FRG12.seq	random	62.3 F to 63.4 F
			60	T	C
			83	T	G
			93	G	A
Chr7
	5.5 F
		13.MMHAP21FLE1.seq	random	5.5 F
			138	C	G
	12.0 F
		MHAa20d2.seq	random	12.0 F
			95	C	A
		U01663	est	12.0 F
			37	A	G
	13.1 F
		15.MMHAP34FLE3.seq	random	13.1 F
			21	A	T
	25.1 P
		D7Mit195.2	genetic marker	25.1 P
			67	A	G
	26.2 F
		04.MMHAP71FRB7.seq	random	26.2 F
			111	G	A
			117	A	G
			139	G	A
		12.MMHAP70FRD9.seq	random	26.2 F
			44	T	C
			80	G	C
		33.MMHAP27FRC12.seq	random	26.2 F
			77	T	G
		MHAa54e9.seq	random	26.2 F
			37	C	T
		MHAa84e6.seq	random	26.2 F
			105	G	T
			116	A	G
	29.5 F
		41.MMHAP76FLF5.seq	random	29.5 F
			90	T	C
			136	C	A
	37.2 P
		17.MMHAP70FRF8.seq	random	37.2 P
			178	G	A
Chr8
	41.5 F
		23.MMHAP27FRH8.seq	random	41.5 F to 41.5 P
			106	C	T
			128	G	A
		U12919	est	41.5 F
			36	C	T
	73.75 F
		14.MMHAP71FRE8.seq	random	73.2 F to 74.3 F
			46	G	T
Chr9
	4.4 P
		17.MMHAP26FRF8.seq	random	4.4 P
			66	A	T
	12.0 F
		26.MMHAP84FRA11.seq	random	12.0 F
			59	C	G
		29.MMHAP14FLB5.seq	random	12.0 F
			33	G	C
	13.1 F
		28.MMHAP56FRB10.seq	random	13.1 F
			76	G	A
			147	A	G
	17.5 F
		D9Mit286.1	genetic marker	17.5 F
			44	G	A
	17.5 P
		11_27_36iis.seq	random	17.5 P
			53	A	C
		30.MMHAP9FRB12.seq	random	17.5 P
			47	G	A
			151	A	G
	41.5 F
		40.MMHAP66FLF4.seq	random	41.5 F
			43	G	T
			89	T	C
	57.9 F
		01.MMHAP90FRA7.seq	random	57.9 F
			33	T	C
			96	C	T
	57.9 P
		D9Mit14.1	genetic marker	57.9 P
			25	A	G
			42	A	G
			119	C	A
			142	A	G
	61.2 F
		D9Mit278.2	genetic marker	61.2 F
			26	G	A
Chr10
	2.2 F
		20.MMHAP4FLG2.seq	random	2.2 F
			132	A	G
		21.MMHAP91FLG3.seq	random	2.2 F
			114	A	G
		47.MMHAP7FRH11.seq	random	2.2 F
			155	C	T
	3.3 F
		D10Mit1.1	genetic marker	3.3 F
			84	C	T
	16.4 F
		D10Mit126.1	genetic marker	16.4 F
			23	A	G
	21.9 F
		38.MMHAP75FRE11.seq	random	21.9 F to 21.9 P
			35	C	T
	47.0 P
		26.MMHAP53FLA5.seq	random	47.0 P
			37	T	C
			50	T	C
	62.3 F
		08.MMHAP84FLC2.seq	random	62.3 F
			30	A	G
	62.3 P
		14.MMHAP32FLE2.seq	random	62.3 P
			74	A	G
			94	T	A
	63.4 P
		14.MMHAP61FLE2.seq	random	63.4 P
			28	C	T
		D16333	est	63.4 P
			39	T	C
Chr11
	2.2 F
		09.MMHAP48FLC3.seq	random	2.2 F
			100	C	A
	13.1 F
		21.MMHAP67FLG3.seq	random	13.1 F
			49	C	G
		46.MMHAP86FRH10.seq	random	13.1 F
			20	C	T
	16.4 F
		02.MMHAP5FLA2.seq	random	15.3 F to 17.5 P
			75	G	A
	17.5 F
		48.MMHAP46FRH12.seq	random	17.5 F
			95	C	T
	18.05 F
		MHAa84f6.seq	random	17.5 P to 18.6 F
			57	C	T
	18.6 F
		U14419	est	18.6 F
			126	A	G
	19.15 F
		01.MMHAP59FRA7.seq	random	18.6 F to 19.7 P
			113	C	T
	19.7 F
		32.MMHAP9FLC5.seq	random	19.7 F
			136	A	G
	25.1 P
		30.MMHAP6FLB6.seq	random	25.1 P
			123	G	C
		D11Mit310.1	genetic marker	25.1 P
			44	C	A
	30.6 F
		06.MMHAP36FRB9.seq	random	29.5 F to 31.7 F
			20	A	G
			75	G	A
			165	G	T
	31.7 F
		06.MMHAP23FLB3.seq	random	31.7 F
			160	C	T
		X80417	est	31.7 F
			48	C	T
	33.9 P
		9_15_91.seq	random	33.9 P
			27	A	T
	37.75 F
		03.MMHAP63FLA3.seq	random	37.2 P to 38.3 F
			64	C	T
			132	C	T
	39.3 F
		22.MMHAP12FRH7.seq	random	39.3 F
			109	C	T
	40.4 P
		X84896	est	40.4 P
			138	C	T
	43.7 F
		38.MMHAP58FLE5.seq	random	43.7 F
			56	T	C
		40.MMHAP37FRF10.seq	random	43.7 F
			31	T	C
			47	T	C
	43.7 P
		D11Mit324.2	genetic marker	43.7 P
			67	G	A
	44.8 F
		D11Mit326.1	genetic marker	44.8 F
			82	A	G
	49.2 F
		Z49085	est	49.2 F
			49	C	T
			62	A	C
			84	C	A
			98	G	A
	50.3 F
		18.MMHAP86FRF9.seq	random	50.3 P to 50.3 F
			48	T	C
	53.6 P
		34.MHAa63g10.seq	random	53.6 P
			41	A	G
			102	T	C
	55.75 F
		45.MMHAP33FRG12.seq	random	53.6 F to 57.9 F
			35	A	G
	63.4 F
		Results_ER_9_1_95_3_41.seq	random	63.4 P to 63.4 F
			24	C	A
Chr12
	5.5 F
		MHAa82a4.seq	random	5.5 F
			116	G	A
		X80899	est	5.5 F to 5.5 P
			25	C	T
	9.8 F
		38.MMHAP88FRE11.seq	random	9.8 P to 9.8 F
			100	C	T
	57.35 F
		M86750	est	56.8 F to 57.9 F
			34	A	G
Chr13
	7.7 F
		MHAa67f1.seq	random	7.7 F
			65	A	G
			146	A	G
	9.8 F
		13.MMHAP28FRE7.seq	random	9.8 F
			121	G	A
	15.3 F
		20.MMHAP22FRG8.seq	random	15.3 P to 15.3 F
			39	C	A
			91	G	T
	25.1 F
		31.MMHAP76FRC10.seq	random	25.1 F
			154	C	A
		47.MHAa95d11.seq	random	25.1 F
			33	A	G
	37.2 F
		11.MMHAP69FLD2.seq	random	37.2 F
			31	C	T
	39.3 P
		45.MMHAP5FRG12.seq	random	39.3 P
			51	A	T
	40.4 F
		44.MMHAP88FRG11.seq	random	40.4 F
			45	A	G
Chr14
	20.8 F
		12.MMHAP84FRD9.seq	random	20.8 F
			149	A	G
		16.MMHAP42FLF1.seq	random	20.8 F
			131	C	T
		38.MMHAP41FLE5.seq	random	20.8 F
			79	T	C
			102	A	C
	23.9616 P
		M73759	est	23.9616 P
			57	G	A
			107	C	T
	30.6 F
		09.MHAa55e9.seq	random	30.6 F to 30.6 P
			56	G	C
			82	C	T
			124	A	G
		M81445	est	30.6 P to 30.6 F
			115	C	T
	52.5 F
		09.MMHAP86FLC3.seq	random	52.5 F
			49	G	C
			96	T	A
			98	T	A
		26.MMHAP11FRA11.seq	random	52.5 F
			71	T	G
		42.MMHAP38FLF6.seq	random	52.5 F
			110	T	C
Chr15
	17.5 F
		45.MMHAP36FRG12.seq	random	17.5 F
			54	C	T
			84	T	A
	27.3 P
		D15Mit270.1	genetic marker	27.3 P
			89	T	A
	29.5 F
		03.MMHAP35FRA9.seq	random	29.5 F
			50	G	T
		34.MMHAP75FRD10.seq	random	29.5 F
			57	A	G
			77	A	C
			87	G	A
	32.8 F
		M21734	est	32.8 F
			63	G	T
	44.25 P
		10.MMHAP30FLD1.seq	random	42.6 P to 45.9 P
			79	C	T
	56.8 F
		10.MMHAP5FLD1.seq	random	56.8 F
			143	G	A
	59 F
		M95545	est	57.9 F to 60.1 F
			48	T	C
	61.2 P
		D15Mit97.2	genetic marker	61.2 P
			50	C	T
Chr16
	29.5 F
		D16Mit138.1	genetic marker	29.5 F
			29	G	A
		U13263	est	29.5 F
			26	A	T
	33.35 F
		16.MHAa89f4.seq	random	32.8 F to 33.9 F
			43	T	C
	45.9 F
		MHAa21c11.seq	random	45.9 F
			143	A	T
Chr17
	10.35 F
		19.MMHAP33FRG7.seq	random	9.8 F to 10.9 F
			86	A	G
		M55637	est	9.8 F to 10.9 F
			58	G	A
	10.9 F
		15.MMHAP54FLE3.seq	random	10.9 F
			118	G	A
			150	A	C
	33.9 F
		D17Mit217.3	genetic marker	33.9 F
			27	T	C
			109	T	G
	47.0 F
		mHAa31f11.seq	random	47.0 F
			21	T	G
Chr18
	6.20634 F
		MHAa22g12.seq	random	7.7 F to 4.71268 P
			130	C	A
	9.8 F
		14.MMHAP9FRE8.seq	random	9.8 F
			24	C	T
			41	T	G
			60	G	A
			74	A	T
			85	T	C
		MHAa84h6.seq	random	9.8 F
			132	C	A
		X58995	est	9.8 F to 9.8 P
			102	T	G
	9.8 P
		21.MMHAP54FLG3.seq	random	9.8 P
			24	G	A
		40.MMHAP11FRF10.seq	random	9.8 P
			101	G	T
	19.7 F
		MHAa30e3.seq	random	19.7 F to 19.7 P
			63	G	A
	19.7 P
		24.MMHAP33FRH9.seq	random	19.7 P
			48	C	G
	25.1 F
		28.MMHAP7FRB10.seq	random	25.1 F
			42	G	C
Chr19
	2.2 F
		40.MMHAP45FRF10.seq	random	2.2 F
			112	C	T
	34.45 F
		20.MMHAP32FLG2.seq	random	35.0 F to 33.9 P
			76	T	C
ChrX
	21.9 F
		34.MMHAP28FLD4.seq	random	21.9 F
			151	T	C
	24.0 P
		28.MMHAP28FRB10.seq	random	24.0 P
			23	T	C

For further information contact:

Kerstin Lindblad-Toh