SNP Map Table: BALB/cByJ v.s. C3H/HeJ

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:BALB/cByJ	Gt:C3H/HeJ
Chr1
	15.85 F
		13.MMHAP88FRE7.seq	random	15.3 F to 16.4 F
			35	G	T
	17.5 F
		05.MMHAP9FLB2.seq	random	17.5 F
			108	C	T
	25.1 P
		24.MMHAP29FRH9.seq	random	25.1 P
			130	C	T
	25.5124 F
		46.MMHAP82FLH4.seq	random	25.1 F to 25.9248 F
			70	T	C
	31.7 P
		41.MMHAP57FLF5.seq	random	31.7 P
			80	A	G
	32.8 F
		28.MMHAP86FRB10.seq	random	32.8 F
			119	T	G
	34.2306 F
		29.MMHAP15FLB5.seq	random	34.2306 F
			23	T	C
	37.2 F
		L23637	est	37.2 F
			54	T	C
	49.75 F
		31.MMHAP17FRC10.seq	random	49.2 P to 50.3 F
			148	A	G
			165	C	G
		MHAa21c3.seq	random	49.2 P to 50.3 F
			72	A	C
	51.4 F
		Results_ER_9_1_95_3_5.seq	random	51.4 F
			112	A	G
	54.6 F
		41.MMHAP6FLF5.seq	random	54.6 F
			123	G	A
	57.9 F
		19.MMHAP66FLG1.seq	random	57.9 F
			66	G	A
		MHAa27a6.seq	random	57.9 F
			67	T	C
	66.7 F
		10.MMHAP84FLD1.seq	random	66.7 F
			86	T	C
	74.3 F
		D19405	est	73.2 F to 75.4 F
			38	A	G
	82.0 F
		29.MMHAP6FRB11.seq	random	82.0 F
			130	A	G
		D1Mit266.1	genetic marker	82.0 F
			23	A	G
	91.75515 F
		12.MMHAP37FRD9.seq	random	91.7103 P to 91.8 F
			21	A	G
			121	G	A
	91.8 F
		24.MMHAP87FRH9.seq	random	91.8 F
			70	A	G
		X04648	est	91.8 F
			75	C	A
			90	A	G
	91.8 P
		D1Mit455.1	genetic marker	91.8 P
			32	T	C
			120	A	G
			194	T	C
	94.0 P
		D1Mit540.1	genetic marker	94.0 P
			54	G	A
Chr2
	27.3 F
		32.MMHAP4FLC5.seq	random	27.3 P to 27.3 F
			98	A	C
	31.7 F
		41.MMHAP45FRF11.seq	random	31.7 F
			137	C	T
	32.8 P
		31.MMHAP64FRC10.seq	random	32.8 P
			43	T	C
	50.3 F
		33.MMHAP63FLC6.seq	random	50.3 F
			52	G	A
		D43796	est	50.3 F
			115	G	A
	50.3 P
		Results_ER_9_5_95_41.seq	random	50.3 P
			170	A	G
	51.4 F
		01.MMHAP26FRA7.seq	random	50.3 P to 52.5 F
			68	T	A
	51.95 F
		D38218	est	52.5 P to 51.4 F
			38	C	T
	52.5 F
		44.MMHAP79FLG5.seq	random	52.5 P to 52.5 F
			164	G	A
		46.MMHAP59FLH4.seq	random	52.5 F
			118	G	A
	55.7 F
		38.MMHAP33FRE11.seq	random	55.7 F
			128	A	G
	59.0 F
		11.MMHAP44FRD8.seq	random	59.0 F
			28	G	A
		11.MMHAP87FRD8.seq	random	59.0 F
			50	C	T
	59.55 F
		X80169	est	59.0 F to 60.1 F
			81	T	C
	61.2 F
		X04964	est	61.2 F
			74	T	C
			132	A	C
	83.65 F
		27.MMHAP64FLA6.seq	random	83.1 F to 84.2 F
			54	A	G
	98.4 F
		24.MMHAP91FLH3.seq	random	98.4 F
			49	T	C
		U09421	est	98.4 F
			60	G	A
			101	T	C
Chr3
	9.679 P
		11.MMHAP26FRD8.seq	random	9.679 P
			99	C	T
			125	G	T
		L11316	est	9.679 P
			158	A	G
	15.3 F
		Results_ER_8_28_95_2_4.seq	random	15.3 F
			30	T	C
			47	G	A
	16.4 F
		43.MMHAP97FRG10.seq	random	16.4 F
			106	T	G
	17.5 P
		08.MMHAP18FRC8.seq	random	17.5 P
			103	T	C
		26.MMHAP20FRA11.seq	random	17.5 P
			120	T	C
	25.1 F
		35.MMHAP59FLD5.seq	random	25.1 F
			58	G	A
	25.1 P
		D3Mit52.2	genetic marker	25.1 P
			65	G	A
	29.5 P
		D3Mit281.1	genetic marker	29.5 P
			88	A	G
			118	T	C
	33.9 F
		16.MMHAP28FLF1.seq	random	33.9 P to 33.9 F
			76	C	A
		D3Mit28.2	genetic marker	33.9 F
			27	C	T
		U04541	est	33.9 F to 33.9 P
			90	G	A
	40.4 F
		48.MMHAP22FRH12.seq	random	40.4 P to 40.4 F
			56	A	C
	64.5 P
		D3Mit323.1	genetic marker	64.5 P
			19	A	T
Chr4
	31.15 F
		34.MHAa65T_M13Rev.seq	random	30.6 F to 31.7 F
			149	C	A
	31.7 F
		33.MMHAP15FLC6.seq	random	31.7 F
			87	T	A
		X03687	est	31.7 F to 31.7 P
			36	C	T
			108	G	T
	35 P
		13.MMHAP64FLE1.seq	random	33.9 P to 36.1 P
			30	A	G
			81	A	T
Chr5
	0.0 F
		MHAa7d3.seq	random	0.0 F
			39	A	T
			112	G	T
			131	A	T
	3.85 F
		29.MMHAP35FLB5.seq	random	3.3 F to 4.4 F
			155	A	G
	4.4 F
		D5Mit179.1	genetic marker	4.4 F
			46	C	A
			88	T	C
	5.5 F
		36.MMHAP17FRD12.seq	random	5.5 F
			85	C	A
	8.7 F
		32.MMHAP62FLC5.seq	random	8.7 F
			96	T	C
	16.95 F
		06.MMHAP9FLB3.seq	random	16.4 F to 17.5 F
			34	T	G
		MHAa87h2.seq	random	16.4 F to 17.5 F
			123	A	C
	17.5 F
		mHAa21f10.seq	random	17.5 P to 17.5 F
			40	G	C
	18.6 F
		MHAa52c2.seq	random	18.6 F
			100	G	A
			121	G	A
	18.6 P
		MHAa84d6.seq	random	18.6 P
			95	T	G
			128	A	G
	27.3 F
		D43963	est	27.3 F
			80	T	C
			160	A	G
	37.75 F
		L23801	est	37.2 P to 38.3 F
			135	G	T
	38.3 P
		D5Mit115	genetic marker	38.3 P
			33	A	T
	40.4 F
		12.MMHAP17FRD9.seq	random	40.4 F
			23	C	T
	48.65 F
		08.MMHAP59FRC8.seq	random	48.1 F to 49.2 F
			57	G	A
	49.23689 P
		mHAa21e7.seq	random	54.77378 P to 43.7 P
			154	A	G
Chr6
	3.3 P
		03.MMHAP86FRA9.seq	random	3.3 P
			38	C	A
	6.6 F
		MHAa75g2.seq	random	6.6 F
			42	C	T
			114	A	G
			133	C	A
	12.0 P
		U20371	est	12.0 P
			136	T	G
	13.1 P
		D6Mit183.1	genetic marker	13.1 P
			81	C	T
	18.6 F
		29.MHAa92c5.seq	random	18.6 F
			21	C	T
			36	A	T
		32.MMHAP88FLC5.seq	random	18.6 F
			49	A	G
	21.9 F
		48.MMHAP9FRH12.seq	random	21.9 F
			20	G	A
			83	T	C
			105	A	C
	29.5 F
		26.MMHAP36FLA5.seq	random	29.5 F
			157	T	G
	31.7 P
		D6Mit365.3	genetic marker	31.7 P
			48	A	T
	36.9555 P
		28.MMHAP38FRB10.seq	random	40.011 P to 33.9 P
			20	T	A
			102	A	G
			124	A	C
	42.6 F
		44.MMHAP85FLG5.seq	random	41.5 F to 43.7 F
			63	A	G
	45.9 P
		15.MHAa10f3.seq	random	45.9 P
			90	T	C
	47.0 F
		28.MMHAP6FRB10.seq	random	47.0 F
			62	C	T
			118	C	A
		30.MMHAP30FLB6.seq	random	47.0 F
			131	T	C
		32.MMHAP4FRC11.seq	random	47.0 F
			119	T	C
	49.2 F
		16.MMHAP67FLF1.seq	random	49.2 F
			49	C	T
	63.4 F
		03.MMHAP54FRA9.seq	random	63.4 F to 63.4 P
			52	G	T
		35.MMHAP94FLD5.seq	random	63.4 F to 63.4 P
			104	C	T
	65.6 F
		15.MMHAP6FLE3.seq	random	65.6 F
			62	G	A
			137	C	T
Chr7
	1.1 F
		27.MMHAP70FLA6.seq	random	1.1 F to 1.1 P
			120	A	T
	12.0 F
		26.MMHAP57FLA5.seq	random	12.0 F
			125	A	C
		33.MMHAP5FLC6.seq	random	12.0 F
			77	A	G
	15.3 F
		23.MMHAP35FRH8.seq	random	15.3 F
			48	G	C
			55	T	G
		D17813	est	15.3 F
			98	C	T
			131	G	A
		U53591	est	15.3 F
			64	G	T
	26.2 F
		04.MMHAP71FRB7.seq	random	26.2 F
			111	A	G
			117	G	A
			139	A	G
		12.MMHAP70FRD9.seq	random	26.2 F
			44	C	T
			80	C	G
		MHAa84e6.seq	random	26.2 F
			105	T	G
			116	G	A
	30.6 F
		D63644	est	30.6 F
			60	C	T
	33.9 F
		21.MMHAP61FLG3.seq	random	33.9 F
			84	A	G
	35.0 P
		MHAa54h10.seq	random	35.0 P
			57	G	A
			89	A	G
	37.2 F
		26.MMHAP94FLA5.seq	random	37.2 F
			55	T	C
			63	A	G
			75	G	A
	40.95 F
		41.MMHAP64FLF5.seq	random	39.3 F to 42.6 F
			45	T	C
			91	T	C
	42.6 F
		D18377	est	42.6 F
			69	C	G
			130	C	T
Chr8
	4.4 F
		32.MMHAP64FRC11.seq	random	4.4 F
			83	C	T
	35 F
		U13838	est	35.0 F to 35.0 P
			25	A	G
	41.5 F
		23.MMHAP27FRH8.seq	random	41.5 F to 41.5 P
			106	T	C
			128	A	G
	44.8 F
		36.MMHAP61FRD12.seq	random	44.8 F
			31	T	C
Chr9
	60.1 F
		D17914	est	60.1 F
			86	A	G
Chr10
	0.55 F
		43.MMHAP61FRG10.seq	random	0.0 F to 1.1 P
			126	G	T
	3.3 P
		30.MMHAP29FRB12.seq	random	3.3 P
			73	T	C
	8.7 F
		41.MMHAP61FRF11.seq	random	8.7 F
			30	C	T
	16.4 F
		L10106	est	16.4 F
			140	G	A
	21.9 F
		38.MMHAP75FRE11.seq	random	21.9 F to 21.9 P
			35	T	C
	47.0 P
		28.MMHAP15FLB4.seq	random	47.0 P
			128	T	C
		MHAa67d12.seq	random	47.0 P
			67	T	C
	62.3 P
		14.MMHAP32FLE2.seq	random	62.3 P
			74	G	A
			94	A	T
	63.4 P
		14.MMHAP61FLE2.seq	random	63.4 P
			28	T	C
		D16333	est	63.4 P
			39	C	T
Chr11
	8.7 P
		MDB0504	est	8.7 P
			56	G	A
	9.8 F
		03.MMHAP34FRA9.seq	random	9.8 F
			20	C	T
			34	T	C
	10.9 F
		Results_ER_9_1_95_3_31.seq	random	10.9 F
			137	C	T
	12 F
		MHAa67b4.seq	random	10.9 F to 13.1 F
			46	C	T
	13.1 F
		M84746	est	13.1 F
			57	T	C
			107	A	G
			108	A	G
	25.1 P
		D11Mit310.1	genetic marker	25.1 P
			44	A	C
	26.75 F
		15.MMHAP89FLE3.seq	random	26.2 P to 27.3 F
			120	A	G
	29.5 F
		21.MMHAP66FLG3.seq	random	29.5 F
			68	C	T
		U21226	est	29.5 F
			117	A	G
	30.6 F
		06.MMHAP36FRB9.seq	random	29.5 F to 31.7 F
			20	G	A
			75	A	G
			165	T	G
	31.7 F
		06.MMHAP23FLB3.seq	random	31.7 F
			160	T	C
		X80417	est	31.7 F
			48	T	C
	33.9 P
		9_15_91.seq	random	33.9 P
			27	T	A
	43.7 F
		38.MMHAP58FLE5.seq	random	43.7 F
			56	C	T
		40.MMHAP37FRF10.seq	random	43.7 F
			31	C	T
			47	C	T
	45.34105 P
		D11Mit369	genetic marker	45.34105 P
			99	T	G
	50.3 F
		18.MMHAP86FRF9.seq	random	50.3 P to 50.3 F
			48	C	T
	53.6 P
		03.MMHAP28FRA9.seq	random	53.6 P
			112	C	T
		34.MHAa63g10.seq	random	53.6 P
			41	G	A
			102	C	T
	55.75 F
		45.MMHAP33FRG12.seq	random	53.6 F to 57.9 F
			35	G	A
	61.2 F
		L12687	est	61.2 F
			128	T	C
	62.3 F
		D11Mit123.3	genetic marker	62.3 F
			58	G	A
	63.4 F
		Results_ER_9_1_95_3_41.seq	random	63.4 P to 63.4 F
			24	A	C
	79.8 P
		D11Mit103.1	genetic marker	79.8 P
			30	T	C
Chr12
	3.3 F
		D12Mit209.2	genetic marker	3.3 F
			97	C	T
	3.3 P
		47.MMHAP44FLH5.seq	random	3.3 P
			36	G	T
			59	C	T
	44.8 F
		30.MMHAP12FLB6.seq	random	44.8 P to 44.8 F
			24	G	T
			50	G	A
			80	C	T
			113	G	A
	51.4 P
		D12Mit17.1	genetic marker	51.4 P
			106	T	C
	57.35 F
		M86750	est	56.8 F to 57.9 F
			34	G	A
Chr13
	23.5 F
		16.MHAa63b4.seq	random	23.0 F to 24.0 P
			65	T	C
	24.0 F
		34.MMHAP35FRD10.seq	random	24.0 F
			39	A	G
			70	G	A
		40.MMHAP84FRF10.seq	random	24.0 F
			77	A	G
			97	T	A
	25.1 F
		31.MMHAP76FRC10.seq	random	25.1 F
			154	A	C
		47.MHAa95d11.seq	random	25.1 F
			33	G	A
	37.2 F
		M62766	est	37.2 F
			25	G	A
	40.4 F
		44.MMHAP88FRG11.seq	random	40.4 F
			45	G	A
Chr14
	2.2 F
		MHAa7c2.seq	random	2.2 F
			90	G	A
	38.3 F
		19.MHAa43d7.seq	random	38.3 F
			48	A	C
			84	G	T
Chr15
	14.2 F
		X97817	est	14.2 F
			40	G	A
	56.8 F
		10.MMHAP5FLD1.seq	random	56.8 F
			143	A	G
	59 F
		M95545	est	57.9 F to 60.1 F
			48	C	T
	61.2 P
		D15Mit97.2	genetic marker	61.2 P
			50	T	C
Chr16
	7.7 F
		R75266	est	7.7 F
			49	A	G
			112	A	T
	9.8 F
		44.MMHAP75FRG11.seq	random	9.8 F
			149	T	G
	27.3 F
		U19380	est	27.3 F
			138	T	A
	29.5 F
		D16Mit138.1	genetic marker	29.5 F
			29	A	G
		U13263	est	29.5 F
			26	T	A
	33.35 F
		16.MHAa89f4.seq	random	32.8 F to 33.9 F
			43	C	T
	45.9 F
		MHAa21c11.seq	random	45.9 F
			143	T	A
	51.4 P
		MHAa29a8.seq	random	51.4 P
			62	T	C
			74	T	A
Chr17
	6.88799 P
		MHAa34f3.seq	random	6.88799 P
			22	T	A
	10.35 F
		19.MMHAP33FRG7.seq	random	9.8 F to 10.9 F
			86	G	A
		M55637	est	9.8 F to 10.9 F
			58	A	G
			97	C	T
	10.9 F
		15.MMHAP54FLE3.seq	random	10.9 F
			118	A	G
			150	C	A
	33.9 F
		D17Mit217.3	genetic marker	33.9 F
			27	C	T
			109	G	T
	50.3 P
		D17Mit123.2	genetic marker	50.3 P
			26	T	G
Chr18
	9.8 P
		21.MMHAP54FLG3.seq	random	9.8 P
			24	A	G
	26.2 F
		27.MMHAP68FLA6.seq	random	26.2 F
			31	A	G
			63	C	T
			65	T	A
		D18Mit100.2	genetic marker	26.2 F
			61	A	G
	28.4 F
		10.MMHAP35FLD1.seq	random	28.4 F
			71	C	A
	31.7 F
		41.MMHAP54FLF5.seq	random	31.7 F
			90	G	A
Chr19
	13.1 F
		D19Mit110	genetic marker	13.1 F
			28	T	G
		D19Mit16.1	genetic marker	13.1 F
			35	G	T
		MHAa78g8.seq	random	13.1 F
			42	A	G
	34.45 F
		20.MMHAP32FLG2.seq	random	35.0 F to 33.9 P
			76	C	T
	44.8 P
		30.MMHAP84FLB6.seq	random	44.8 P
			87	C	T

For further information contact:

Kerstin Lindblad-Toh