SNP Map Table: AKR/J v.s. DBA/2J

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:AKR/J	Gt:DBA/2J
Chr1
	4.4 P
		16.MMHAP23FRF7.seq	random	4.4 P
			66	C	T
			149	G	T
	5.5 P
		D1Mit242.1	genetic marker	5.5 P
			62	G	A
	6.05 F
		15.MMHAP20FRE9.seq	random	5.5 F to 6.6 P
			72	A	G
			96	T	C
	15.85 F
		13.MMHAP88FRE7.seq	random	15.3 F to 16.4 F
			35	T	G
	17.5 F
		MHAa78e6.seq	random	17.5 F
			120	T	G
	25.5124 F
		46.MMHAP82FLH4.seq	random	25.1 F to 25.9248 F
			63	C	G
	31.7 P
		41.MMHAP57FLF5.seq	random	31.7 P
			80	A	G
	42.05 F
		M89800	est	42.6 F to 41.5 F
			108	G	A
	43.15 F
		N28140	est	42.6 F to 43.7 F
			141	A	C
	51.4 F
		D1Mit53.2	genetic marker	51.4 F
			22	G	C
		Results_ER_9_1_95_3_5.seq	random	51.4 F
			112	A	G
	59.0 F
		39.MMHAP54FLE6.seq	random	59.0 F
			59	C	T
	74.3 F
		41.MMHAP84FRF11.seq	random	75.4 F to 73.2 P
			63	A	G
			67	G	A
	82.0 F
		D1Mit266.1	genetic marker	82.0 F
			23	G	A
		D1Mit424.1	genetic marker	82.0 F
			24	G	A
	85.2 F
		D1Mit57.1	genetic marker	85.2 F
			26	G	A
	85.2 P
		D1Mit539.1	genetic marker	85.2 P
			84	C	T
		D1Mit539.2	genetic marker	85.2 P
			25	A	G
	91.8 F
		24.MMHAP87FRH9.seq	random	91.8 F
			70	A	G
	94.0 P
		D1Mit540.1	genetic marker	94.0 P
			54	A	G
	100.5 P
		MHAa54g11.seq	random	100.5 P
			130	T	C
			161	A	G
	101.6 F
		21.MMHAP97FRG9.seq	random	101.6 F
			66	A	G
	113.7 F
		X83202	est	113.7 F
			23	T	C
Chr2
	38.3 F
		37.MHAa90d1.seq	random	38.3 F
			48	G	A
		41.MMHAP25FRF11.seq	random	38.3 F
			69	G	A
	50.3 F
		33.MMHAP63FLC6.seq	random	50.3 F
			52	A	G
	51.4 F
		01.MMHAP26FRA7.seq	random	50.3 P to 52.5 F
			68	A	T
	52.45 P
		34.MMHAP46FRD10.seq	random	40.4 P to 64.5 P
			40	G	A
	52.5 F
		46.MMHAP59FLH4.seq	random	52.5 F
			118	A	G
	55.7 F
		38.MMHAP33FRE11.seq	random	55.7 F
			128	G	A
	59.0 F
		11.MMHAP44FRD8.seq	random	59.0 F
			28	G	A
		11.MMHAP87FRD8.seq	random	59.0 F
			50	C	T
		27.MMHAP25FLA6.seq	random	59.0 F
			131	T	C
	59.55 F
		X80169	est	59.0 F to 60.1 F
			81	T	C
	61.2 F
		09.MMHAP61FLC3.seq	random	61.2 F
			77	C	T
	66.7 F
		13.MMHAP61FRE7.seq	random	66.7 F
			46	C	A
	70.58879 F
		M55669	est	74.47758 P to 66.7 F
			53	G	A
	72.1 F
		D2Mit284.4	genetic marker	72.1 F
			51	T	A
			59	C	T
Chr3
	2.2 F
		M63554	est	2.2 F
			158	C	T
	4.4 F
		45.MMHAP35FRG12.seq	random	4.4 P to 4.4 F
			45	C	T
	9.679 P
		11.MMHAP26FRD8.seq	random	9.679 P
			99	T	C
			125	T	G
		L11316	est	9.679 P
			158	G	A
	33.9 F
		D3Mit28.2	genetic marker	33.9 F
			27	T	C
		U04541	est	33.9 F to 33.9 P
			90	A	G
	41.5 F
		M65034	est	41.5 F
			27	T	C
			79	A	C
	44.8 F
		24.MMHAP9FLH3.seq	random	44.8 F
			132	T	C
	47.55 F
		08.MMHAP28FRC8.seq	random	47.0 P to 48.1 F
			50	G	A
			123	T	A
	58.45 F
		27.MMHAP69FRA12.seq	random	57.9 F to 59.0 F
			66	T	G
Chr4
	18.6 F
		19.MMHAP88FRG7.seq	random	18.6 F
			56	A	G
	30.6 P
		17.MMHAP91FLF2.seq	random	30.6 P
			20	A	G
			126	A	T
	31.7 F
		33.MMHAP15FLC6.seq	random	31.7 F
			87	A	T
		X03687	est	31.7 F to 31.7 P
			36	T	C
			108	T	G
	35.0 P
		MHAa54a7.seq	random	35.0 P
			83	T	C
		X01971	est	35.0 P
			145	A	T
	39.3 F
		MHAa78e1.seq	random	39.3 F to 39.3 P
			149	C	T
	45.9 F
		MHAa54g5.seq	random	45.9 F
			89	A	G
	47.55 F
		01.MMHAP71FRA7.seq	random	47.0 F to 48.1 F
			111	C	T
	52.5 F
		37.MMHAP88FRE10.seq	random	52.5 F
			109	A	G
	53.6 F
		41.MMHAP25FLF5.seq	random	53.6 F
			104	T	G
	71.0 P
		21.MMHAP88FLG3.seq	random	71.0 P
			57	A	G
		27.MMHAP7FRA12.seq	random	71.0 P
			64	A	G
		42.MMHAP20FRF12.seq	random	71.0 P
			105	T	A
Chr5
	0.0 F
		MHAa7d3.seq	random	0.0 F
			39	A	T
			112	G	T
			131	A	T
	3.85 F
		29.MMHAP35FLB5.seq	random	3.3 F to 4.4 F
			77	A	T
	5.5 F
		36.MMHAP17FRD12.seq	random	5.5 F
			157	A	G
	14.2 F
		MHAa54a9.seq	random	14.2 F
			88	A	G
	16.95 F
		06.MMHAP9FLB3.seq	random	16.4 F to 17.5 F
			34	G	T
		MHAa87h2.seq	random	16.4 F to 17.5 F
			123	C	A
	25.65 F
		MHAa35a12.seq	random	25.1 F to 26.2 F
			126	T	C
	27.3 F
		D43963	est	27.3 F
			160	A	G
	37.75 F
		L23801	est	37.2 P to 38.3 F
			138	A	G
	38.3 P
		D5Mit115	genetic marker	38.3 P
			33	T	A
	66.7 F
		34.MMHAP64FRD10.seq	random	66.7 F
			42	T	C
		D5Mit33.2	genetic marker	66.7 F
			48	G	A
			86	T	A
	77.6 P
		11.MMHAP20FRD8.seq	random	77.6 P
			28	G	A
	81.37419 F
		U28724	est	76.5 F to 86.24838 P
			35	A	G
Chr6
	3.3 F
		M60493	est	3.3 F
			110	A	G
	7.7 F
		32.MHAa55g8.seq	random	7.7 F
			133	T	A
	12.0 P
		L08757	est	12.0 P
			162	A	G
	18.6 F
		29.MHAa92c5.seq	random	18.6 F
			21	C	T
			36	A	T
		32.MMHAP88FLC5.seq	random	18.6 F
			49	A	G
	21.9 F
		48.MMHAP9FRH12.seq	random	21.9 F
			20	G	A
			83	T	C
			105	A	C
	23.0 F
		36.MMHAP26FRD12.seq	random	23.0 F
			108	A	C
	29.5 F
		26.MMHAP36FLA5.seq	random	29.5 F
			157	T	G
	31.7 F
		28.MMHAP27FRB10.seq	random	31.7 F
			34	C	G
	41.5 P
		23.MMHAP7FLH2.seq	random	41.5 P
			117	C	T
	43.7 P
		44.MMHAP27FRG11.seq	random	43.7 P
			122	C	T
			123	C	T
	45.9 P
		15.MHAa10f3.seq	random	45.9 P
			90	C	T
	47.0 F
		28.MMHAP6FRB10.seq	random	47.0 F
			62	T	C
			118	A	C
		30.MMHAP30FLB6.seq	random	47.0 F
			131	C	T
		32.MMHAP4FRC11.seq	random	47.0 F
			119	C	T
	62.85 F
		45.MMHAP94FRG12.seq	random	62.3 F to 63.4 F
			60	T	C
			83	T	G
			93	G	A
	63.4 P
		D6Mit371.4	genetic marker	63.4 P
			34	G	A
			73	G	A
	65.05 F
		MHAa52a5.seq	random	63.4 P to 66.7 F
			36	C	T
			110	C	T
	66.7 F
		12.MMHAP34FLD3.seq	random	66.7 F
			35	A	G
Chr7
	5.5 F
		13.MMHAP21FLE1.seq	random	5.5 F
			138	C	G
	12.0 F
		26.MMHAP57FLA5.seq	random	12.0 F
			125	A	C
		33.MMHAP5FLC6.seq	random	12.0 F
			77	A	G
		MHAa20d2.seq	random	12.0 F
			95	C	A
		U01663	est	12.0 F
			37	A	G
	13.1 F
		15.MMHAP34FLE3.seq	random	13.1 F
			76	G	A
			132	A	G
	15.3 F
		23.MMHAP35FRH8.seq	random	15.3 F
			48	G	C
			55	T	G
		D17813	est	15.3 F
			98	C	T
			131	G	A
	25.1 P
		D7Mit195.2	genetic marker	25.1 P
			67	A	G
	26.2 F
		04.MMHAP71FRB7.seq	random	26.2 F
			111	G	A
			117	A	G
			139	G	A
		12.MMHAP70FRD9.seq	random	26.2 F
			44	T	C
			80	G	C
		33.MMHAP27FRC12.seq	random	26.2 F
			77	T	G
		MHAa54e9.seq	random	26.2 F
			37	C	T
		MHAa84e6.seq	random	26.2 F
			105	G	T
			116	A	G
	29.5 F
		36.MHAa92g12.seq	random	29.5 F
			72	C	A
		41.MMHAP76FLF5.seq	random	29.5 F
			90	T	C
			136	C	A
	30.6 F
		D63644	est	30.6 F
			60	C	T
	33.9 F
		21.MMHAP61FLG3.seq	random	33.9 F
			84	A	G
	35.0 P
		MHAa54h10.seq	random	35.0 P
			57	G	A
			89	A	G
	37.2 F
		26.MMHAP94FLA5.seq	random	37.2 F
			55	T	C
			63	A	G
			75	G	A
	37.2 P
		17.MMHAP70FRF8.seq	random	37.2 P
			178	G	A
	40.95 F
		41.MMHAP64FLF5.seq	random	39.3 F to 42.6 F
			45	T	C
			91	T	C
	41.5 F
		17.MMHAP44FLF2.seq	random	41.5 F
			53	A	G
	42.6 F
		D18377	est	42.6 F
			69	C	G
			130	C	T
	43.7 P
		22.MMHAP75FRH7.seq	random	43.7 P
			54	A	G
Chr8
	4.4 F
		32.MMHAP64FRC11.seq	random	4.4 F
			83	C	T
	41.5 F
		U12919	est	41.5 F
			36	C	T
	73.75 F
		14.MMHAP71FRE8.seq	random	73.2 F to 74.3 F
			46	G	T
Chr9
	4.4 P
		17.MMHAP26FRF8.seq	random	4.4 P
			66	A	T
	6.6 F
		34.MMHAP23FLD4.seq	random	6.6 F
			106	G	A
	12.0 F
		26.MMHAP84FRA11.seq	random	12.0 F
			59	C	G
		29.MMHAP14FLB5.seq	random	12.0 F
			33	G	C
	17.5 P
		30.MMHAP9FRB12.seq	random	17.5 P
			47	G	A
			151	A	G
	41.5 F
		MHAa52b7.seq	random	41.5 F
			60	C	T
		U49739	est	41.5 F
			29	T	C
	56.8 P
		04.MMHAP88FRB7.seq	random	56.8 P
			52	A	C
		32.MMHAP63FLC5.seq	random	56.8 P
			48	T	C
			152	G	A
	61.2 F
		D9Mit278.2	genetic marker	61.2 F
			26	G	A
Chr10
	0.55 F
		43.MMHAP61FRG10.seq	random	0.0 F to 1.1 P
			126	G	T
	2.2 F
		20.MMHAP4FLG2.seq	random	2.2 F
			132	A	G
		21.MMHAP91FLG3.seq	random	2.2 F
			114	A	G
		47.MMHAP7FRH11.seq	random	2.2 F
			155	C	T
	3.3 F
		D10Mit1.1	genetic marker	3.3 F
			84	C	T
	13.65 F
		M70641	est	12.0 F to 15.3 F
			115	C	T
	16.4 F
		D10Mit126.1	genetic marker	16.4 F
			23	A	G
	47.0 P
		26.MMHAP53FLA5.seq	random	47.0 P
			37	T	C
			50	T	C
		28.MMHAP15FLB4.seq	random	47.0 P
			128	T	C
		MHAa67d12.seq	random	47.0 P
			67	T	C
	62.3 F
		08.MMHAP84FLC2.seq	random	62.3 F
			30	A	G
	62.3 P
		14.MMHAP32FLE2.seq	random	62.3 P
			74	A	G
			94	T	A
	63.4 P
		14.MMHAP61FLE2.seq	random	63.4 P
			28	C	T
		D16333	est	63.4 P
			39	T	C
Chr11
	2.2 F
		09.MMHAP48FLC3.seq	random	2.2 F
			100	C	A
	8.7 P
		MDB0504	est	8.7 P
			56	G	A
	9.8 F
		03.MMHAP34FRA9.seq	random	9.8 F
			20	C	T
			34	T	C
	10.9 F
		Results_ER_9_1_95_3_31.seq	random	10.9 F
			137	C	T
	12 F
		MHAa67b4.seq	random	10.9 F to 13.1 F
			46	C	T
	13.1 F
		46.MMHAP86FRH10.seq	random	13.1 F
			20	C	T
		M84746	est	13.1 F
			57	T	C
			107	A	G
			108	A	G
	16.4 F
		02.MMHAP5FLA2.seq	random	15.3 F to 17.5 P
			75	G	A
	17.5 F
		48.MMHAP46FRH12.seq	random	17.5 F
			95	C	T
	18.05 F
		MHAa84f6.seq	random	17.5 P to 18.6 F
			57	C	T
	18.6 F
		U14419	est	18.6 F
			126	A	G
	19.15 F
		01.MMHAP59FRA7.seq	random	18.6 F to 19.7 P
			113	C	T
	20.8 F
		42.MMHAP50FRF12.seq	random	20.8 F
			24	G	T
	25.1 P
		30.MMHAP6FLB6.seq	random	25.1 P
			123	G	C
	26.75 F
		15.MMHAP89FLE3.seq	random	26.2 P to 27.3 F
			120	A	G
	29.5 F
		21.MMHAP66FLG3.seq	random	29.5 F
			68	C	T
		U21226	est	29.5 F
			117	A	G
	33.9 P
		9_15_91.seq	random	33.9 P
			27	A	T
	37.75 F
		03.MMHAP63FLA3.seq	random	37.2 P to 38.3 F
			64	C	T
			92	T	C
			132	C	T
	39.3 F
		22.MMHAP12FRH7.seq	random	39.3 F
			109	C	T
	40.4 P
		X84896	est	40.4 P
			138	C	T
	43.7 F
		38.MMHAP58FLE5.seq	random	43.7 F
			56	T	C
	45.34105 P
		D11Mit369	genetic marker	45.34105 P
			99	T	G
	50.3 F
		18.MMHAP86FRF9.seq	random	50.3 P to 50.3 F
			48	T	C
	53.6 P
		34.MHAa63g10.seq	random	53.6 P
			41	A	G
			102	T	C
	55.75 F
		45.MMHAP33FRG12.seq	random	53.6 F to 57.9 F
			35	A	G
	61.2 F
		46.MMHAP76FLH4.seq	random	62.3 F to 60.1 P
			97	G	A
			176	G	A
		MHAa81g3.seq	random	62.3 F to 60.1 P
			86	G	C
	62.3 F
		D11Mit123.3	genetic marker	62.3 F
			58	G	A
	71 F
		MHAa8h1.seq	random	71.0 F to 71.0 P
			26	C	T
Chr12
	5.5 F
		X80899	est	5.5 F to 5.5 P
			25	C	T
	17.5 F
		X57983	est	17.5 F
			31	G	T
	23.0 F
		17.MMHAP9FRF8.seq	random	23.0 F
			36	C	T
			67	G	A
	60.1 P
		D12Mit41.1	genetic marker	60.1 P
			88	T	G
Chr13
	2.2 F
		L17324	est	2.2 F
			25	A	C
		MHAa81e12.seq	random	2.2 F
			87	T	C
		U52461	est	2.2 F
			125	A	G
	7.7 F
		MHAa67f1.seq	random	7.7 F
			65	A	G
			146	A	G
	24.0 F
		40.MMHAP84FRF10.seq	random	24.0 F
			77	A	G
			97	T	A
		41.MMHAP83FLF5.seq	random	24.0 F
			42	T	C
	25.1 F
		47.MHAa95d11.seq	random	25.1 F
			33	A	G
	32.8 F
		M80360	est	32.8 P to 32.8 F
			88	T	C
	37.2 F
		11.MMHAP69FLD2.seq	random	37.2 F
			31	C	T
	39.3 P
		45.MMHAP5FRG12.seq	random	39.3 P
			51	A	T
Chr14
	0.0 P
		30.MMHAP88FRB12.seq	random	0.0 P
			29	C	T
	2.2 F
		MHAa7c2.seq	random	2.2 F
			90	G	A
	20.8 F
		12.MMHAP84FRD9.seq	random	20.8 F
			149	A	G
		16.MMHAP42FLF1.seq	random	20.8 F
			131	C	T
		38.MMHAP41FLE5.seq	random	20.8 F
			79	T	C
			102	A	C
	23.9616 P
		M73759	est	23.9616 P
			57	G	A
			107	C	T
	30.6 F
		09.MHAa55e9.seq	random	30.6 F to 30.6 P
			56	G	C
			82	C	T
			124	A	G
		M81445	est	30.6 P to 30.6 F
			115	C	T
	52.5 F
		42.MMHAP38FLF6.seq	random	52.5 F
			110	T	C
	63.4 F
		17.MMHAP9FLF2.seq	random	63.4 F
			24	T	A
Chr15
	14.2 F
		X97817	est	14.2 F
			40	G	A
	16.4 F
		D15Mit139.2	genetic marker	16.4 F
			153	T	C
	17.5 F
		45.MMHAP36FRG12.seq	random	17.5 F
			54	C	T
			84	T	A
	29.5 F
		34.MMHAP75FRD10.seq	random	29.5 F
			57	A	G
			77	A	C
			87	G	A
	44.25 P
		10.MMHAP30FLD1.seq	random	42.6 P to 45.9 P
			79	C	T
	56.8 F
		10.MMHAP5FLD1.seq	random	56.8 F
			143	G	A
	59 F
		M95545	est	57.9 F to 60.1 F
			48	T	C
Chr16
	3.3 F
		20.MMHAP9FLG2.seq	random	3.3 P to 3.3 F
			92	C	T
	7.7 F
		R75266	est	7.7 F
			49	A	G
			112	A	T
	27.3 F
		U19380	est	27.3 F
			138	T	A
	29.5 F
		46.MMHAP31FLH4.seq	random	29.5 P to 29.5 F
			68	T	A
			90	T	C
		U13263	est	29.5 F
			26	A	T
	51.4 P
		MHAa29a8.seq	random	51.4 P
			62	T	C
			74	T	A
Chr17
	10.35 F
		19.MMHAP33FRG7.seq	random	9.8 F to 10.9 F
			86	A	G
		M55637	est	9.8 F to 10.9 F
			58	G	A
	10.9 F
		15.MMHAP54FLE3.seq	random	10.9 F
			150	A	C
	12.0 P
		D17Mit264.1	genetic marker	12.0 P
			32	A	T
			68	A	G
	33.9 F
		30.MMHAP66FLB6.seq	random	33.9 F
			130	T	C
		D17Mit217.3	genetic marker	33.9 F
			27	T	C
			109	T	G
		mHAa21e8.seq	random	33.9 F to 33.9 P
			155	T	G
	47.0 F
		mHAa31f11.seq	random	47.0 F
			21	T	G
Chr18
	4.4 P
		25.MMHAP80FLA4.seq	random	4.4 P
			140	C	T
	6.20634 F
		MHAa22g12.seq	random	7.7 F to 4.71268 P
			130	C	A
	9.8 F
		14.MMHAP9FRE8.seq	random	9.8 F
			24	C	T
			41	T	G
			60	G	A
			74	A	T
		MHAa84h6.seq	random	9.8 F
			132	C	A
		X58995	est	9.8 F to 9.8 P
			102	T	G
	9.8 P
		40.MMHAP11FRF10.seq	random	9.8 P
			101	G	T
	15.85 F
		Results_ER_8_28_95_2_26.seq	random	15.3 F to 16.4 F
			82	C	T
			142	T	C
	19.7 F
		MHAa30e3.seq	random	19.7 F to 19.7 P
			63	G	A
	25.1 F
		28.MMHAP7FRB10.seq	random	25.1 F
			42	G	C
	26.2 F
		X76295	est	26.2 F
			29	G	A
	31.7 F
		41.MMHAP54FLF5.seq	random	31.7 F
			90	G	A
Chr19
	2.2 F
		40.MMHAP45FRF10.seq	random	2.2 F
			112	C	T
	13.1 F
		D19Mit110	genetic marker	13.1 F
			28	T	G
		D19Mit16.1	genetic marker	13.1 F
			35	G	T
		MHAa78g8.seq	random	13.1 F
			42	A	G
	18.6 F
		D19Mit99.2	genetic marker	18.6 F
			40	G	A
	44.8 P
		30.MMHAP84FLB6.seq	random	44.8 P
			87	C	T
ChrX
	21.9 F
		34.MMHAP28FLD4.seq	random	21.9 F
			151	T	C
	56.4206 P
		32.MMHAP94FLC5.seq	random	56.4206 P
			85	C	T

For further information contact:

Kerstin Lindblad-Toh