SNP Map Table: AKR/J v.s. C57BL/6J

Unassigned SNPs are included in the FTP tables

Chromosome
GenDist(avg)
FragmentSourceGenDist
SnpPosGt:AKR/JGt:C57BL/6J
Chr1
5.5 P
36.MMHAP69FLD6.seqrandom6.6 P to 4.4 P
94GA
8.7 F
12.MMHAP31FLD3.seqrandom8.7 P to 8.7 F
79TC
17.5 F
MHAa78e6.seqrandom17.5 F
120TG
25.5124 F
46.MMHAP82FLH4.seqrandom25.1 F to 25.9248 F
63CG
70CT
31.7 P
41.MMHAP57FLF5.seqrandom31.7 P
80AG
32.8 F
28.MMHAP86FRB10.seqrandom32.8 F
119GT
33.9 F
18.MMHAP46FRF9.seqrandom33.9 F
34CA
34.2306 F
29.MMHAP15FLB5.seqrandom34.2306 F
23CT
42.05 F
M89800est42.6 F to 41.5 F
108GA
43.15 F
N28140est42.6 F to 43.7 F
141AC
51.4 F
D1Mit53.2genetic marker51.4 F
22GC
Results_ER_9_1_95_3_5.seqrandom51.4 F
112AG
59.0 F
39.MMHAP54FLE6.seqrandom59.0 F
59CT
64.5 F
02.MMHAP35FRA8.seqrandom64.5 F
38TA
103CT
67.8 F
D1Mit421.1genetic marker67.8 F
129GC
69.1245 F
MHAa67e10.seqrandom70.449 F to 67.8 F
130TG
173AG
69.9 F
28.MHAa65T_M13Rev.seqrandom69.9 F
131GA
73.2 P
07.MMHAP61FRC7.seqrandom73.2 P
117GT
20.MHAa96b8.seqrandom73.2 P
96CT
D1Mit31.1genetic marker73.2 P
26TC
74.3 F
41.MMHAP84FRF11.seqrandom75.4 F to 73.2 P
63AG
67GA
D19405est73.2 F to 75.4 F
38GA
75.4 F
43.MMHAP26FRG10.seqrandom75.4 F
106GA
91.8 F
31.MMHAP57FLC4.seqrandom91.8 F
61AG
94.0 F
X92969est94.0 F
36TC
50AG
91CT
94.0 P
D1Mit540.1genetic marker94.0 P
54AG
100.5 P
MHAa54g11.seqrandom100.5 P
130TC
161AG
101.6 F
Z73151est101.6 F
60CT
Chr2
27.3 F
32.MMHAP4FLC5.seqrandom27.3 P to 27.3 F
98CA
31.7 F
41.MMHAP45FRF11.seqrandom31.7 F
137TC
48.65 F
Z17804est49.2 P to 48.1 F
55CT
50.3 F
33.MMHAP63FLC6.seqrandom50.3 F
52AG
D43796est50.3 F
115AG
51.4 F
01.MMHAP26FRA7.seqrandom50.3 P to 52.5 F
68AT
01.MMHAP6FLA1.seqrandom51.4 F
119AG
52.45 P
34.MMHAP46FRD10.seqrandom40.4 P to 64.5 P
40GA
54.6 F
M87276est54.6 F to 54.6 P
27GA
59.0 F
11.MMHAP87FRD8.seqrandom59.0 F
40GA
60.1 F
D2Mit399.1genetic marker60.1 F
39CT
61.2 F
X01450est61.2 F
118TA
66.7 F
27.MMHAP59FLA6.seqrandom66.7 F
65GA
138GA
D2Mit404.1genetic marker66.7 F
24GA
74.3 P
U27177est74.3 P
177GA
78.7 F
36.MHAa91g12.seqrandom78.7 F
90CT
98.4 F
24.MMHAP91FLH3.seqrandom98.4 F
49CT
U09421est98.4 F
101CT
Chr3
9.679 P
11.MMHAP26FRD8.seqrandom9.679 P
99TC
125TG
L11316est9.679 P
158GA
15.3 F
Results_ER_8_28_95_2_4.seqrandom15.3 F
30CT
47AG
16.4 F
43.MMHAP97FRG10.seqrandom16.4 F
106TG
17.5 P
08.MMHAP18FRC8.seqrandom17.5 P
103TC
26.MMHAP20FRA11.seqrandom17.5 P
38GT
120TC
44.MMHAP7FLG5.seqrandom17.5 P
28AG
25.1 F
35.MMHAP59FLD5.seqrandom25.1 F
58GA
25.1 P
D3Mit52.2genetic marker25.1 P
65AG
29.5 P
D3Mit281.1genetic marker29.5 P
88AG
118TC
153AG
40.4 F
11.MMHAP11FLD2.seqrandom40.4 F
62GA
34.MMHAP22FRD10.seqrandom40.4 F
109CT
48.MMHAP22FRH12.seqrandom40.4 P to 40.4 F
56AC
44.8 F
24.MMHAP9FLH3.seqrandom44.8 F
132TC
47.55 F
08.MMHAP28FRC8.seqrandom47.0 P to 48.1 F
50GA
123TA
49.2 F
D3Mit160.2genetic marker49.2 F
82AG
M63961est49.2 F
124GA
54.6 F
X61434est54.6 F
129CT
Chr4
3.3 F
X61397est3.3 F
124GA
10.9 F
MHAa38d1.seqrandom10.9 F
133TC
18.6 F
19.MMHAP88FRG7.seqrandom18.6 F
56AG
35.0 P
MHAa54a7.seqrandom35.0 P
83TC
X01971est35.0 P
145AT
39.3 F
MHAa78e1.seqrandom39.3 F to 39.3 P
149CT
47.55 F
01.MMHAP71FRA7.seqrandom47.0 F to 48.1 F
111CT
52.5 F
37.MMHAP88FRE10.seqrandom52.5 F
109AG
138CT
54.6 F
18.MMHAP82FLF3.seqrandom54.6 F
70TA
32.MMHAP11FLC5.seqrandom54.6 F
94AG
38.MMHAP34FLE5.seqrandom54.6 F
22AC
54TA
59.55 F
X61399est59.0 P to 60.1 F
110CT
60.1 F
D4Mit203.2genetic marker60.1 F
38AG
61.2 F
U51112est61.2 F
52TC
62.3 F
D4Mit339.2genetic marker62.3 F
87CT
124AG
140CT
Chr5
3.85 F
29.MMHAP35FLB5.seqrandom3.3 F to 4.4 F
155GA
4.4 F
D5Mit179.1genetic marker4.4 F
46CA
5.5 F
36.MMHAP17FRD12.seqrandom5.5 F
85AC
14.2 F
MHAa54a9.seqrandom14.2 F
88AG
16.95 F
MHAa87h2.seqrandom16.4 F to 17.5 F
123CA
18.6 F
MHAa52c2.seqrandom18.6 F
100AG
121AG
25.1 F
33.MMHAP28FLC6.seqrandom25.1 F
122CT
25.65 F
MHAa35a12.seqrandom25.1 F to 26.2 F
126TC
27.3 F
D43963est27.3 F
80CT
32.8 P
M86829est32.8 P
60TC
128AG
48.65 F
08.MMHAP59FRC8.seqrandom48.1 F to 49.2 F
57GA
59.3702 F
16.MMHAP36FRF7.seqrandom57.9 F to 60.8404 F
20GA
112CT
66.7 F
34.MMHAP64FRD10.seqrandom66.7 F
42TC
D5Mit33.2genetic marker66.7 F
48GA
86TA
77.6 P
11.MMHAP20FRD8.seqrandom77.6 P
28GA
81.37419 F
U28724est76.5 F to 86.24838 P
35AG
Chr6
3.3 F
06.MMHAP84FRB9.seqrandom3.3 F to 3.3 P
64GA
MHAa74g5.seqrandom3.3 F
79TG
7.7 F
32.MHAa55g8.seqrandom7.7 F
133TA
12.0 P
L08757est12.0 P
162AG
U20371est12.0 P
136GT
16.4 F
46.MMHAP28FRH10.seqrandom16.4 F
102CT
21.9 F
48.MMHAP9FRH12.seqrandom21.9 F
20GA
83TC
105AC
23.0 F
36.MMHAP26FRD12.seqrandom23.0 F
108AC
29.5 F
26.MMHAP36FLA5.seqrandom29.5 F
157TG
40.4 P
X99043est40.4 P
24CT
42.6 F
44.MMHAP85FLG5.seqrandom41.5 F to 43.7 F
54GC
43.7 P
30.MMHAP25FRB12.seqrandom43.7 P
38AT
138AG
45.9 P
15.MHAa10f3.seqrandom45.9 P
90CT
47.0 F
28.MMHAP6FRB10.seqrandom47.0 F
62TC
118AC
30.MMHAP30FLB6.seqrandom47.0 F
131CT
32.MMHAP4FRC11.seqrandom47.0 F
119CT
51.4 P
D6Mit13genetic marker51.4 P
118GA
D6Mit337.3genetic marker51.4 P
81CT
62.85 F
37.MMHAP17FRE10.seqrandom62.3 F to 63.4 F
89GA
45.MMHAP94FRG12.seqrandom62.3 F to 63.4 F
21AG
60TC
83TG
63.4 F
03.MMHAP54FRA9.seqrandom63.4 F to 63.4 P
52TG
35.MMHAP94FLD5.seqrandom63.4 F to 63.4 P
104TC
63.4 P
D6Mit371.4genetic marker63.4 P
34GA
73GA
66.7 F
M23236est66.7 F to Tel
98AT
Chr7
12.0 F
26.MMHAP57FLA5.seqrandom12.0 F
125AC
33.MMHAP5FLC6.seqrandom12.0 F
77AG
13.1 F
15.MMHAP34FLE3.seqrandom13.1 F
21TA
76GA
132AG
15.3 F
23.MMHAP35FRH8.seqrandom15.3 F
48GC
55TG
D17813est15.3 F
98CT
131GA
22.45 F
MHAa34e4.seqrandom21.9 F to 23.0 F
35GT
26.2 F
12.MMHAP70FRD9.seqrandom26.2 F
44TC
80GC
30.6 F
R74768est30.6 F
34TC
Results_ER_8_28_95_1___169.seqrandom30.6 F
23TG
48GA
33.9 F
13.MHAa56f1.seqrandom33.9 F
66CT
35.0 P
MHAa54h10.seqrandom35.0 P
89AG
40.95 F
41.MMHAP64FLF5.seqrandom39.3 F to 42.6 F
22GA
45TC
41.5 F
17.MMHAP44FLF2.seqrandom41.5 F
26CT
53AG
61AC
Chr8
4.4 F
32.MMHAP64FRC11.seqrandom4.4 F
83CT
44.MMHAP30FLG5.seqrandom4.4 F
75GA
82AC
101CT
17.1619 F
14.MMHAP27FRE8.seqrandom18.6 F to 15.7238 F
21CG
46AG
99GA
122CG
23.0 F
38.MMHAP16FLE5.seqrandom23.0 F
139TC
35 F
24.MMHAP34FLH3.seqrandom35.0 F to 35.0 P
79CG
35.0 F
34.MMHAP86FLD4.seqrandom35.0 F
75CT
D8Mit145.1genetic marker35.0 F
45AG
X76654est35.0 F
37GA
36.1 F
M23529est36.1 F
127CG
38.8 P
13.MMHAP80FLE1.seqrandom38.3 P to 39.3 P
26AC
39.3 F
15.MMHAP82FLE3.seqrandom39.3 F
117TC
Z49987est39.3 F
38CT
41.5 F
23.MMHAP27FRH8.seqrandom41.5 F to 41.5 P
106TC
128AG
42.6 F
20.MMHAP88FRG8.seqrandom42.6 P to 42.6 F
56CG
122CA
154CA
44.8 F
36.MMHAP61FRD12.seqrandom44.8 F
31CT
73.75 F
14.MMHAP71FRE8.seqrandom73.2 F to 74.3 F
46GT
Chr9
4.4 P
19.MMHAP29FRG7.seqrandom4.4 P
31GA
6.6 F
34.MMHAP23FLD4.seqrandom6.6 F
106GA
12.0 F
26.MMHAP84FRA11.seqrandom12.0 F
59CG
132AG
17.5 F
D9Mit286.1genetic marker17.5 F
60GA
22.45 F
45.MMHAP28FLG6.seqrandom21.9 F to 23.0 P
128TC
33.9 P
D9Mit233.1genetic marker33.9 P
28AG
41.5 F
40.MMHAP66FLF4.seqrandom41.5 F
89CT
MHAa52b7.seqrandom41.5 F
60CT
U49739est41.5 F
29TC
43.7 F
D9Mit211.1genetic marker43.7 F
38TG
X60367est43.7 F
111AT
124TC
53.6 F
R74805est53.6 F
27CT
56.8 P
04.MMHAP88FRB7.seqrandom56.8 P
52AC
32.MMHAP63FLC5.seqrandom56.8 P
48TC
97TC
152GA
60.1 F
D17914est60.1 F
31GA
61.2 F
D9Mit278.2genetic marker61.2 F
26GA
Chr10
0.55 F
43.MMHAP61FRG10.seqrandom0.0 F to 1.1 P
126GT
2.2 F
21.MMHAP91FLG3.seqrandom2.2 F
114AG
47.MMHAP7FRH11.seqrandom2.2 F
155CT
3.3 F
D10Mit1.1genetic marker3.3 F
84CT
5.5 F
21.MMHAP26FLG3.seqrandom5.5 F to 5.5 P
31CT
42AG
68GA
13.65 F
M70641est12.0 F to 15.3 F
115CT
16.4 F
D10Mit126.1genetic marker16.4 F
23AG
L10106est16.4 F
140AG
41.5 F
R75378est41.5 F
22TG
47.0 P
28.MMHAP15FLB4.seqrandom47.0 P
128TC
MHAa67d12.seqrandom47.0 P
67TC
63.4 P
D16333est63.4 P
39TC
Chr11
2.2 F
09.MMHAP48FLC3.seqrandom2.2 F
100CA
4.4 F
02.MMHAP90FLA2.seqrandom4.4 F
31GT
58TC
8.7 P
MDB0504est8.7 P
56GA
9.8 F
32.MMHAP26FRC11.seqrandom9.8 F
143CT
13.1 F
21.MMHAP67FLG3.seqrandom13.1 F
49GC
46.MMHAP86FRH10.seqrandom13.1 F
20CT
M84746est13.1 F
57TC
107AG
108AG
19.7 F
32.MMHAP9FLC5.seqrandom19.7 F
53GA
120AG
20.8 F
42.MMHAP50FRF12.seqrandom20.8 F
24GT
27.3 F
24.MMHAP48FLH3.seqrandom27.3 F
47GC
101GA
29.5 F
U21226est29.5 F
66AT
43.7 F
38.MMHAP58FLE5.seqrandom43.7 F
56TC
43.7 P
D11Mit324.2genetic marker43.7 P
67AG
44.8 F
D11Mit326.1genetic marker44.8 F
82GA
D11Mit38.2genetic marker44.8 F
80TC
45.34105 P
D11Mit369genetic marker45.34105 P
23CT
99TG
50.3 F
18.MMHAP86FRF9.seqrandom50.3 P to 50.3 F
48TC
53.6 P
34.MHAa63g10.seqrandom53.6 P
41AG
102TC
55.75 F
45.MMHAP33FRG12.seqrandom53.6 F to 57.9 F
35AG
59.0 F
X06762est59.0 F
134GA
61.2 F
46.MMHAP76FLH4.seqrandom62.3 F to 60.1 P
97GA
62.3 F
D11Mit123.3genetic marker62.3 F
58GA
71 F
MHAa8h1.seqrandom71.0 F to 71.0 P
26CT
79.8 P
D11Mit103.1genetic marker79.8 P
30CT
Chr12
2.75 F
10.MHAa91e10.seqrandom2.2 F to 3.3 F
51AG
85TC
135GA
MHAa34f9.seqrandom2.2 F to 3.3 F
36TC
3.3 P
47.MMHAP44FLH5.seqrandom3.3 P
36TG
59TC
5.5 F
16.MMHAP46FRF7.seqrandom5.5 F to 5.5 P
30TA
93CT
99CT
139GA
18.MMHAP42FLF3.seqrandom5.5 F to 5.5 P
108CA
MHAa82a4.seqrandom5.5 F
116AG
9.8 F
46.MMHAP28FLH4.seqrandom9.8 F to 9.8 P
128TC
X60703est9.8 F
37GT
72CT
103GA
10.35 F
14.MMHAP86FLE2.seqrandom9.8 F to 10.9 F
107AT
17.5 F
X57983est17.5 F
31GT
23.0 F
Z11664est23.0 F
102GA
36.1 F
Z46227est36.1 F
140TC
44.8 F
30.MMHAP12FLB6.seqrandom44.8 P to 44.8 F
24GT
50GA
80CT
113GA
51.4 P
D12Mit17.1genetic marker51.4 P
106CT
Chr13
2.2 F
26.MMHAP70FLA5.seqrandom2.2 F
104GA
L17324est2.2 F
25AC
MHAa81e12.seqrandom2.2 F
87TC
U52461est2.2 F
125AG
6.6 F
22.MMHAP67FRH7.seqrandom6.6 F to 6.6 P
101AG
7.7 F
MHAa67f1.seqrandom7.7 F
65AG
146AG
24.0 F
41.MMHAP83FLF5.seqrandom24.0 F
42TC
MHAa34f2.seqrandom24.0 F
25TC
25.1 F
31.MMHAP76FRC10.seqrandom25.1 F
154AG
47.MHAa95d11.seqrandom25.1 F
33AG
32.8 F
M80360est32.8 P to 32.8 F
88TC
37.2 F
11.MMHAP69FLD2.seqrandom37.2 F
31CT
M62766est37.2 F
25AG
37.75 F
06.MMHAP34FLB3.seqrandom37.2 F to 38.3 F
61TG
38.3 F
D37797est38.3 P to 38.3 F
76GA
99AG
130AG
136TC
39.3 P
45.MMHAP5FRG12.seqrandom39.3 P
51AT
40.4 F
44.MMHAP88FRG11.seqrandom40.4 F
45GA
Chr14
25.1 P
U22516est25.1 P
21GT
27.3 P
37.MMHAP64FLE4.seqrandom27.3 P
62AG
109TA
52.5 F
09.MMHAP86FLC3.seqrandom52.5 F
49CG
96AT
98AT
26.MMHAP11FRA11.seqrandom52.5 F
71GT
MHAa70g10.seqrandom52.5 F
117GA
63.4 F
17.MMHAP9FLF2.seqrandom63.4 F
24TA
69.9 F
MHAa67g1.seqrandom69.9 F
120TC
Chr15
16.4 F
mHAa57c12.seqrandom16.4 F to 16.4 P
41AT
76CT
29.5 F
04.MMHAP9FLB1.seqrandom29.5 F
51TG
34.MMHAP75FRD10.seqrandom29.5 F
57AG
77AC
87GA
35.0 F
M64849est35.0 F
99CT
123CG
U11075est35.0 F
95GA
56.8 F
10.MMHAP5FLD1.seqrandom56.8 F
143GA
59 F
M95545est57.9 F to 60.1 F
48TC
Chr16
3.3 F
20.MMHAP9FLG2.seqrandom3.3 P to 3.3 F
92CT
Results_ER_9_1_95_2_24.seqrandom3.3 F
140TG
4.4 F
R74919est4.4 F
28GA
82AG
25.1 P
38.MMHAP44FLE5.seqrandom25.1 P
61GT
81TC
118CT
27.3 F
U19380est27.3 F
138TA
29.5 F
46.MMHAP31FLH4.seqrandom29.5 P to 29.5 F
68TA
90TC
D16Mit138.1genetic marker29.5 F
29AG
34.45 F
Results_ER_8_29_95_1_16.seqrandom33.9 F to 35.0 F
80TC
45.9 F
MHAa21c11.seqrandom45.9 F
143TA
48.65 F
34.MMHAP94FRD10.seqrandom45.9 F to 51.4 P
57CT
73GA
51.4 P
MHAa29a8.seqrandom51.4 P
62TC
74TA
Chr17
2.75 F
L00653est2.2 F to 3.3 F
72AC
6.88799 P
MHAa34f3.seqrandom6.88799 P
22AT
10.35 F
19.MMHAP33FRG7.seqrandom9.8 F to 10.9 F
86AG
35.MMHAP28FRD11.seqrandom9.8 F to 10.9 F
78GC
M55637est9.8 F to 10.9 F
58GA
97TC
10.9 F
15.MMHAP54FLE3.seqrandom10.9 F
150AC
12.0 P
D17Mit264.1genetic marker12.0 P
32AT
68AG
27.3 F
38.MMHAP11FLE5.seqrandom27.3 F
82GA
140GA
50.3 P
D17Mit123.2genetic marker50.3 P
26GT
Chr18
4.4 P
25.MMHAP80FLA4.seqrandom4.4 P
140CT
9.8 F
14.MMHAP9FRE8.seqrandom9.8 F
24CT
41TG
60GA
74AT
MHAa84h6.seqrandom9.8 F
132CA
X58995est9.8 F to 9.8 P
39TA
9.8 P
21.MMHAP54FLG3.seqrandom9.8 P
24AG
40.MMHAP11FRF10.seqrandom9.8 P
101GT
15.3 F
12_5_2_2.seqrandom15.3 F
49TC
134CG
9_15_61lon.seqrandom15.3 F
67CT
9_15_65lon.seqrandom15.3 F
96GA
15.85 F
Results_ER_8_28_95_2_26.seqrandom15.3 F to 16.4 F
82CT
142TC
19.7 F
MHAa30e3.seqrandom19.7 F to 19.7 P
63GA
25.1 F
28.MMHAP7FRB10.seqrandom25.1 F
42GC
26.2 F
X76295est26.2 F
29GA
31.7 F
41.MMHAP54FLF5.seqrandom31.7 F
90GA
Chr19
13.1 F
MHAa78g8.seqrandom13.1 F
42AG
16.95 F
47.MMHAP5FLH5.seqrandom16.4 P to 17.5 F
85GA
18.6 F
D19Mit99.2genetic marker18.6 F
40GA
34.45 F
26.MMHAP54FLA5.seqrandom35.0 F to 33.9 P
126TC
35.0 F
MHAa67a4.seqrandom35.0 F
37CT
94GA
ChrX
56.4206 P
32.MMHAP94FLC5.seqrandom56.4206 P
85CT

For further information contact:

Kerstin Lindblad-Toh