SNP Map Table: AKR/J v.s. C3H/HeJ

Unassigned SNPs are included in the FTP tables

Chromosome
GenDist(avg)
FragmentSourceGenDist
SnpPosGt:AKR/JGt:C3H/HeJ
Chr1
17.5 F
05.MMHAP9FLB2.seqrandom17.5 F
108CT
MHAa78e6.seqrandom17.5 F
120TG
25.5124 F
46.MMHAP82FLH4.seqrandom25.1 F to 25.9248 F
63CG
25.9248 F
33.MMHAP34FRC12.seqrandom25.9248 F
117GA
31.7 P
41.MMHAP57FLF5.seqrandom31.7 P
80AG
37.2 F
L23637est37.2 F
54TC
42.05 F
M89800est42.6 F to 41.5 F
108GA
49.75 F
31.MMHAP17FRC10.seqrandom49.2 P to 50.3 F
148AG
165CG
MHAa21c3.seqrandom49.2 P to 50.3 F
72AC
51.4 F
D1Mit53.2genetic marker51.4 F
22GC
Results_ER_9_1_95_3_5.seqrandom51.4 F
112AG
54.6 F
41.MMHAP6FLF5.seqrandom54.6 F
123GA
57.9 F
19.MMHAP66FLG1.seqrandom57.9 F
66GA
MHAa27a6.seqrandom57.9 F
67TC
73.2 P
07.MMHAP61FRC7.seqrandom73.2 P
117GT
20.MHAa96b8.seqrandom73.2 P
96CT
D1Mit31.1genetic marker73.2 P
26TC
74.3 F
41.MMHAP84FRF11.seqrandom75.4 F to 73.2 P
63AG
67GA
75.4 F
43.MMHAP26FRG10.seqrandom75.4 F
106GA
82.0 F
D1Mit424.1genetic marker82.0 F
24GA
91.75515 F
12.MMHAP37FRD9.seqrandom91.7103 P to 91.8 F
21AG
93AG
121GA
91.8 F
24.MMHAP87FRH9.seqrandom91.8 F
70AG
X04648est91.8 F
75CA
90AG
91.8 P
D1Mit455.1genetic marker91.8 P
32TC
120AG
194TC
100.5 P
MHAa54g11.seqrandom100.5 P
130TC
161AG
101.6 F
Z73151est101.6 F
60CT
Chr2
7.7 P
U22339est7.7 P
140CG
50.3 P
Results_ER_9_5_95_41.seqrandom50.3 P
170AG
52.45 P
34.MMHAP46FRD10.seqrandom40.4 P to 64.5 P
40GA
52.5 F
44.MMHAP79FLG5.seqrandom52.5 P to 52.5 F
164GA
59.0 F
11.MMHAP44FRD8.seqrandom59.0 F
28GA
11.MMHAP87FRD8.seqrandom59.0 F
50CT
27.MMHAP25FLA6.seqrandom59.0 F
131TC
59.55 F
X80169est59.0 F to 60.1 F
81TC
66.7 F
27.MMHAP59FLA6.seqrandom66.7 F
65GA
138GA
D2Mit404.1genetic marker66.7 F
24GA
72.1 F
D2Mit284.4genetic marker72.1 F
59CT
73.2 F
17.MMHAP71FRF8.seqrandom73.2 F
30TC
77TC
79GA
112AG
74.3 P
U27177est74.3 P
177GA
Chr3
16.4 F
43.MMHAP97FRG10.seqrandom16.4 F
106TG
17.5 P
08.MMHAP18FRC8.seqrandom17.5 P
103TC
26.MMHAP20FRA11.seqrandom17.5 P
38GT
120TC
44.MMHAP7FLG5.seqrandom17.5 P
28AG
25.1 F
35.MMHAP59FLD5.seqrandom25.1 F
58GA
29.5 P
D3Mit281.1genetic marker29.5 P
88AG
118TC
153AG
40.4 F
48.MMHAP22FRH12.seqrandom40.4 P to 40.4 F
56AC
42.6 F
X92122est42.6 P to 42.6 F
49GA
44.8 F
24.MMHAP9FLH3.seqrandom44.8 F
132TC
47.55 F
08.MMHAP28FRC8.seqrandom47.0 P to 48.1 F
50GA
123TA
49.2 F
D3Mit160.2genetic marker49.2 F
82AG
M63961est49.2 F
46AG
124GA
50.85 F
MHAa82d4.seqrandom51.4 F to 50.3 P
115GC
64.5 P
D3Mit323.1genetic marker64.5 P
19AT
Chr4
18.6 F
19.MMHAP88FRG7.seqrandom18.6 F
56AG
35.0 P
MHAa54a7.seqrandom35.0 P
83TC
X01971est35.0 P
145AT
39.3 F
MHAa78e1.seqrandom39.3 F to 39.3 P
149CT
52.5 F
37.MMHAP88FRE10.seqrandom52.5 F
109AG
138CT
Chr5
0.0 F
MHAa7d3.seqrandom0.0 F
39AT
112GT
131AT
4.4 F
D5Mit179.1genetic marker4.4 F
46CA
88TC
27.3 F
D43963est27.3 F
160AG
37.75 F
L23801est37.2 P to 38.3 F
135GT
40.4 F
12.MMHAP17FRD9.seqrandom40.4 F
23CT
48.65 F
08.MMHAP59FRC8.seqrandom48.1 F to 49.2 F
57GA
49.23689 P
mHAa21e7.seqrandom54.77378 P to 43.7 P
154AG
66.7 F
34.MMHAP64FRD10.seqrandom66.7 F
42TC
D5Mit33.2genetic marker66.7 F
48GA
86TA
74.3 F
22.MMHAP91FLH1.seqrandom74.3 F
28AG
77.6 P
11.MMHAP20FRD8.seqrandom77.6 P
28GA
81.37419 F
U28724est76.5 F to 86.24838 P
35AG
Chr6
3.3 F
06.MMHAP84FRB9.seqrandom3.3 F to 3.3 P
64GA
3.3 P
03.MMHAP86FRA9.seqrandom3.3 P
38CA
6.6 F
MHAa75g2.seqrandom6.6 F
42CT
114AG
133CA
12.0 P
L08757est12.0 P
162AG
18.6 F
29.MHAa92c5.seqrandom18.6 F
21CT
36AT
32.MMHAP88FLC5.seqrandom18.6 F
49AG
21.9 F
48.MMHAP9FRH12.seqrandom21.9 F
20GA
83TC
105AC
23.0 F
36.MMHAP26FRD12.seqrandom23.0 F
108AC
29.5 F
26.MMHAP36FLA5.seqrandom29.5 F
157TG
31.7 P
D6Mit365.3genetic marker31.7 P
48AT
43.7 P
44.MMHAP27FRG11.seqrandom43.7 P
122CT
123CT
63.4 P
D6Mit371.4genetic marker63.4 P
34GA
73GA
65.05 F
MHAa52a5.seqrandom63.4 P to 66.7 F
36CT
110CT
65.6 P
D6Mit201.2genetic marker65.6 P
67GA
66.7 F
12.MMHAP34FLD3.seqrandom66.7 F
35AG
Chr7
12.0 F
26.MMHAP57FLA5.seqrandom12.0 F
125AC
33.MMHAP5FLC6.seqrandom12.0 F
77AG
13.1 F
15.MMHAP34FLE3.seqrandom13.1 F
21TA
132AG
15.3 F
23.MMHAP35FRH8.seqrandom15.3 F
48GC
55TG
D17813est15.3 F
98CT
131GA
29.5 F
36.MHAa92g12.seqrandom29.5 F
72CA
30.6 F
D63644est30.6 F
60CT
33.9 F
21.MMHAP61FLG3.seqrandom33.9 F
84AG
35.0 P
MHAa54h10.seqrandom35.0 P
57GA
89AG
37.2 F
26.MMHAP94FLA5.seqrandom37.2 F
55TC
63AG
75GA
40.95 F
41.MMHAP64FLF5.seqrandom39.3 F to 42.6 F
45TC
91TC
41.5 F
17.MMHAP44FLF2.seqrandom41.5 F
53AG
42.6 F
D18377est42.6 F
69CG
130CT
43.7 P
22.MMHAP75FRH7.seqrandom43.7 P
54AG
Chr8
4.4 F
32.MMHAP64FRC11.seqrandom4.4 F
83CT
41.5 F
23.MMHAP27FRH8.seqrandom41.5 F to 41.5 P
106TC
128AG
Chr9
6.6 F
34.MMHAP23FLD4.seqrandom6.6 F
106GA
13.1 F
28.MMHAP56FRB10.seqrandom13.1 F
76AG
147GA
17.5 F
D9Mit286.1genetic marker17.5 F
44AG
17.5 P
11_27_36iis.seqrandom17.5 P
53CA
41.5 F
40.MMHAP66FLF4.seqrandom41.5 F
89CT
MHAa52b7.seqrandom41.5 F
60CT
U49739est41.5 F
29TC
56.8 P
04.MMHAP88FRB7.seqrandom56.8 P
52AC
32.MMHAP63FLC5.seqrandom56.8 P
48TC
152GA
57.9 F
01.MMHAP90FRA7.seqrandom57.9 F
33CT
96TC
57.9 P
D9Mit14.1genetic marker57.9 P
25GA
42GA
119AC
142GA
Chr10
0.55 F
43.MMHAP61FRG10.seqrandom0.0 F to 1.1 P
126GT
21.9 F
38.MMHAP75FRE11.seqrandom21.9 F to 21.9 P
35TC
47.0 P
28.MMHAP15FLB4.seqrandom47.0 P
128TC
MHAa67d12.seqrandom47.0 P
67TC
Chr11
8.7 P
MDB0504est8.7 P
56GA
9.8 F
03.MMHAP34FRA9.seqrandom9.8 F
20CT
34TC
10.9 F
Results_ER_9_1_95_3_31.seqrandom10.9 F
137CT
12 F
MHAa67b4.seqrandom10.9 F to 13.1 F
46CT
13.1 F
21.MMHAP67FLG3.seqrandom13.1 F
49GC
M84746est13.1 F
57TC
107AG
108AG
19.7 F
32.MMHAP9FLC5.seqrandom19.7 F
136GA
20.8 F
42.MMHAP50FRF12.seqrandom20.8 F
24GT
25.1 P
D11Mit310.1genetic marker25.1 P
44AC
26.75 F
15.MMHAP89FLE3.seqrandom26.2 P to 27.3 F
120AG
29.5 F
21.MMHAP66FLG3.seqrandom29.5 F
68CT
U21226est29.5 F
117AG
30.6 F
06.MMHAP36FRB9.seqrandom29.5 F to 31.7 F
20GA
75AG
165TG
31.7 F
06.MMHAP23FLB3.seqrandom31.7 F
160TC
X80417est31.7 F
48TC
43.7 F
40.MMHAP37FRF10.seqrandom43.7 F
31CT
47CT
43.7 P
D11Mit324.2genetic marker43.7 P
67AG
44.8 F
D11Mit326.1genetic marker44.8 F
82GA
45.34105 P
D11Mit369genetic marker45.34105 P
99TG
49.2 F
Z49085est49.2 F
62CA
98AG
59.0 F
X06762est59.0 F
134GA
61.2 F
46.MMHAP76FLH4.seqrandom62.3 F to 60.1 P
97GA
176GA
L12687est61.2 F
128TC
MHAa81g3.seqrandom62.3 F to 60.1 P
86GC
62.3 F
D11Mit123.3genetic marker62.3 F
58GA
63.4 F
Results_ER_9_1_95_3_41.seqrandom63.4 P to 63.4 F
24AC
71 F
MHAa8h1.seqrandom71.0 F to 71.0 P
26CT
Chr12
5.5 F
MHAa82a4.seqrandom5.5 F
116AG
9.8 F
38.MMHAP88FRE11.seqrandom9.8 P to 9.8 F
100TC
13.65 F
24.MMHAP34FRH9.seqrandom13.1 F to 14.2 F
53TA
17.5 F
X57983est17.5 F
31GT
23.0 F
17.MMHAP9FRF8.seqrandom23.0 F
36CT
67GA
44.8 F
30.MMHAP12FLB6.seqrandom44.8 P to 44.8 F
24GT
50GA
80CT
113GA
57.35 F
M86750est56.8 F to 57.9 F
34GA
60.1 P
D12Mit41.1genetic marker60.1 P
88TG
Chr13
2.2 F
L17324est2.2 F
25AC
MHAa81e12.seqrandom2.2 F
87TC
U52461est2.2 F
125AG
9.8 F
13.MMHAP28FRE7.seqrandom9.8 F
121AG
15.3 F
20.MMHAP22FRG8.seqrandom15.3 P to 15.3 F
39AC
91TG
24.0 F
40.MMHAP84FRF10.seqrandom24.0 F
77AG
97TA
41.MMHAP83FLF5.seqrandom24.0 F
42TC
25.1 F
31.MMHAP76FRC10.seqrandom25.1 F
154AC
40.4 F
44.MMHAP88FRG11.seqrandom40.4 F
45GA
Chr14
0.0 P
30.MMHAP88FRB12.seqrandom0.0 P
29CT
2.2 F
MHAa7c2.seqrandom2.2 F
90GA
52.5 F
09.MMHAP86FLC3.seqrandom52.5 F
49CG
96AT
98AT
26.MMHAP11FRA11.seqrandom52.5 F
71GT
63.4 F
17.MMHAP9FLF2.seqrandom63.4 F
24TA
Chr15
14.2 F
X97817est14.2 F
40GA
16.4 F
D15Mit139.2genetic marker16.4 F
153TC
mHAa57c12.seqrandom16.4 F to 16.4 P
41AT
27.3 P
D15Mit270.1genetic marker27.3 P
89AT
29.5 F
03.MMHAP35FRA9.seqrandom29.5 F
50TG
32.8 F
M21734est32.8 F
63TG
61.2 P
D15Mit97.2genetic marker61.2 P
50TC
Chr16
3.3 F
20.MMHAP9FLG2.seqrandom3.3 P to 3.3 F
92CT
7.7 F
R75266est7.7 F
49AG
112AT
9.8 F
44.MMHAP75FRG11.seqrandom9.8 F
149TG
27.3 F
U19380est27.3 F
138TA
29.5 F
46.MMHAP31FLH4.seqrandom29.5 P to 29.5 F
68TA
90TC
D16Mit138.1genetic marker29.5 F
29AG
45.9 F
MHAa21c11.seqrandom45.9 F
143TA
51.4 P
MHAa29a8.seqrandom51.4 P
62TC
74TA
Chr17
12.0 P
D17Mit264.1genetic marker12.0 P
32AT
68AG
33.9 F
30.MMHAP66FLB6.seqrandom33.9 F
130TC
mHAa21e8.seqrandom33.9 F to 33.9 P
155TG
Chr18
4.4 P
25.MMHAP80FLA4.seqrandom4.4 P
140CT
9.8 F
14.MMHAP9FRE8.seqrandom9.8 F
85CT
9.8 P
21.MMHAP54FLG3.seqrandom9.8 P
24AG
15.85 F
Results_ER_8_28_95_2_26.seqrandom15.3 F to 16.4 F
82CT
142TC
19.7 P
24.MMHAP33FRH9.seqrandom19.7 P
48GC
26.2 F
X76295est26.2 F
29GA
31.7 F
41.MMHAP54FLF5.seqrandom31.7 F
90GA
Chr19
13.1 F
D19Mit110genetic marker13.1 F
28TG
D19Mit16.1genetic marker13.1 F
35GT
MHAa78g8.seqrandom13.1 F
42AG
18.6 F
D19Mit99.2genetic marker18.6 F
40GA
34.45 F
20.MMHAP32FLG2.seqrandom35.0 F to 33.9 P
76CT
44.8 P
30.MMHAP84FLB6.seqrandom44.8 P
87CT
ChrX
24.0 P
28.MMHAP28FRB10.seqrandom24.0 P
23CT
29.5 P
12_5_11_6.seqrandom29.5 P
73GA
56.4206 P
32.MMHAP94FLC5.seqrandom56.4206 P
85CT

For further information contact:

Kerstin Lindblad-Toh