SNP Map Table: AKR/J v.s. BALB/cByJ

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:AKR/J	Gt:BALB/cByJ
Chr1
	15.85 F
		13.MMHAP88FRE7.seq	random	15.3 F to 16.4 F
			35	T	G
	17.5 F
		MHAa78e6.seq	random	17.5 F
			120	T	G
	25.1 P
		24.MMHAP29FRH9.seq	random	25.1 P
			130	T	C
	25.5124 F
		46.MMHAP82FLH4.seq	random	25.1 F to 25.9248 F
			63	C	G
			70	C	T
	32.8 F
		28.MMHAP86FRB10.seq	random	32.8 F
			119	G	T
	34.2306 F
		29.MMHAP15FLB5.seq	random	34.2306 F
			23	C	T
	42.05 F
		M89800	est	42.6 F to 41.5 F
			108	G	A
	43.15 F
		N28140	est	42.6 F to 43.7 F
			141	A	C
	51.4 F
		D1Mit53.2	genetic marker	51.4 F
			22	G	C
	59.0 F
		39.MMHAP54FLE6.seq	random	59.0 F
			59	C	T
	66.7 F
		10.MMHAP84FLD1.seq	random	66.7 F
			86	C	T
	73.2 P
		07.MMHAP61FRC7.seq	random	73.2 P
			117	G	T
		20.MHAa96b8.seq	random	73.2 P
			96	C	T
		D1Mit31.1	genetic marker	73.2 P
			26	T	C
	74.3 F
		41.MMHAP84FRF11.seq	random	75.4 F to 73.2 P
			63	A	G
			67	G	A
		D19405	est	73.2 F to 75.4 F
			38	G	A
	75.4 F
		43.MMHAP26FRG10.seq	random	75.4 F
			106	G	A
	82.0 F
		D1Mit266.1	genetic marker	82.0 F
			23	G	A
		D1Mit424.1	genetic marker	82.0 F
			24	G	A
	94.0 P
		D1Mit540.1	genetic marker	94.0 P
			54	A	G
	100.5 P
		MHAa54g11.seq	random	100.5 P
			130	T	C
			161	A	G
	101.6 F
		Z73151	est	101.6 F
			60	C	T
Chr2
	27.3 F
		32.MMHAP4FLC5.seq	random	27.3 P to 27.3 F
			98	C	A
	31.7 F
		41.MMHAP45FRF11.seq	random	31.7 F
			137	T	C
	50.3 F
		33.MMHAP63FLC6.seq	random	50.3 F
			52	A	G
		D43796	est	50.3 F
			115	A	G
	51.4 F
		01.MMHAP26FRA7.seq	random	50.3 P to 52.5 F
			68	A	T
	52.45 P
		34.MMHAP46FRD10.seq	random	40.4 P to 64.5 P
			40	G	A
	52.5 F
		46.MMHAP59FLH4.seq	random	52.5 F
			118	A	G
	55.7 F
		38.MMHAP33FRE11.seq	random	55.7 F
			128	G	A
	59.0 F
		27.MMHAP25FLA6.seq	random	59.0 F
			131	T	C
	61.2 F
		X04964	est	61.2 F
			74	C	T
			132	C	A
	66.7 F
		27.MMHAP59FLA6.seq	random	66.7 F
			65	G	A
			138	G	A
		D2Mit404.1	genetic marker	66.7 F
			24	G	A
	72.1 F
		D2Mit284.4	genetic marker	72.1 F
			59	C	T
	73.2 F
		17.MMHAP71FRF8.seq	random	73.2 F
			30	T	C
			77	T	C
			79	G	A
			112	A	G
	74.3 P
		U27177	est	74.3 P
			177	G	A
	83.65 F
		27.MMHAP64FLA6.seq	random	83.1 F to 84.2 F
			54	G	A
	98.4 F
		24.MMHAP91FLH3.seq	random	98.4 F
			49	C	T
		U09421	est	98.4 F
			101	C	T
Chr3
	9.679 P
		11.MMHAP26FRD8.seq	random	9.679 P
			99	T	C
			125	T	G
		L11316	est	9.679 P
			158	G	A
	15.3 F
		Results_ER_8_28_95_2_4.seq	random	15.3 F
			30	C	T
			47	A	G
	17.5 P
		26.MMHAP20FRA11.seq	random	17.5 P
			38	G	T
		44.MMHAP7FLG5.seq	random	17.5 P
			28	A	G
	25.1 P
		D3Mit52.2	genetic marker	25.1 P
			65	A	G
	33.9 F
		16.MMHAP28FLF1.seq	random	33.9 P to 33.9 F
			76	A	C
		D3Mit28.2	genetic marker	33.9 F
			27	T	C
		U04541	est	33.9 F to 33.9 P
			90	A	G
	42.6 F
		X92122	est	42.6 P to 42.6 F
			49	G	A
	44.8 F
		24.MMHAP9FLH3.seq	random	44.8 F
			132	T	C
	47.55 F
		08.MMHAP28FRC8.seq	random	47.0 P to 48.1 F
			50	G	A
			123	T	A
	49.2 F
		D3Mit160.2	genetic marker	49.2 F
			82	A	G
		M63961	est	49.2 F
			124	G	A
	50.85 F
		MHAa82d4.seq	random	51.4 F to 50.3 P
			115	G	C
Chr4
	18.6 F
		19.MMHAP88FRG7.seq	random	18.6 F
			56	A	G
	31.15 F
		34.MHAa65T_M13Rev.seq	random	30.6 F to 31.7 F
			149	A	C
	31.7 F
		33.MMHAP15FLC6.seq	random	31.7 F
			87	A	T
		X03687	est	31.7 F to 31.7 P
			36	T	C
			108	T	G
	35.0 P
		MHAa54a7.seq	random	35.0 P
			83	T	C
		X01971	est	35.0 P
			145	A	T
	39.3 F
		MHAa78e1.seq	random	39.3 F to 39.3 P
			149	C	T
	52.5 F
		37.MMHAP88FRE10.seq	random	52.5 F
			109	A	G
			138	C	T
Chr5
	3.85 F
		29.MMHAP35FLB5.seq	random	3.3 F to 4.4 F
			155	G	A
	5.5 F
		36.MMHAP17FRD12.seq	random	5.5 F
			85	A	C
	16.95 F
		06.MMHAP9FLB3.seq	random	16.4 F to 17.5 F
			34	G	T
		MHAa87h2.seq	random	16.4 F to 17.5 F
			123	C	A
	17.5 F
		mHAa21f10.seq	random	17.5 P to 17.5 F
			40	C	G
	18.6 F
		MHAa52c2.seq	random	18.6 F
			100	A	G
			121	A	G
	18.6 P
		MHAa84d6.seq	random	18.6 P
			95	G	T
			128	G	A
	27.3 F
		D43963	est	27.3 F
			80	C	T
	38.3 P
		D5Mit115	genetic marker	38.3 P
			33	T	A
	66.7 F
		34.MMHAP64FRD10.seq	random	66.7 F
			42	T	C
		D5Mit33.2	genetic marker	66.7 F
			48	G	A
			86	T	A
	74.3 F
		22.MMHAP91FLH1.seq	random	74.3 F
			28	A	G
	77.6 P
		11.MMHAP20FRD8.seq	random	77.6 P
			28	G	A
Chr6
	3.3 F
		06.MMHAP84FRB9.seq	random	3.3 F to 3.3 P
			64	G	A
	12.0 P
		L08757	est	12.0 P
			162	A	G
		U20371	est	12.0 P
			136	G	T
	13.1 P
		D6Mit183.1	genetic marker	13.1 P
			81	T	C
	23.0 F
		36.MMHAP26FRD12.seq	random	23.0 F
			108	A	C
	36.9555 P
		28.MMHAP38FRB10.seq	random	40.011 P to 33.9 P
			20	A	T
			102	G	A
			124	C	A
	42.6 F
		44.MMHAP85FLG5.seq	random	41.5 F to 43.7 F
			63	G	A
	43.7 P
		44.MMHAP27FRG11.seq	random	43.7 P
			122	C	T
			123	C	T
	45.9 P
		15.MHAa10f3.seq	random	45.9 P
			90	C	T
	47.0 F
		28.MMHAP6FRB10.seq	random	47.0 F
			62	T	C
			118	A	C
		30.MMHAP30FLB6.seq	random	47.0 F
			131	C	T
		32.MMHAP4FRC11.seq	random	47.0 F
			119	C	T
	49.2 F
		16.MMHAP67FLF1.seq	random	49.2 F
			49	T	C
	63.4 F
		03.MMHAP54FRA9.seq	random	63.4 F to 63.4 P
			52	T	G
		35.MMHAP94FLD5.seq	random	63.4 F to 63.4 P
			104	T	C
	63.4 P
		D6Mit371.4	genetic marker	63.4 P
			34	G	A
			73	G	A
	65.05 F
		MHAa52a5.seq	random	63.4 P to 66.7 F
			36	C	T
			110	C	T
	65.6 F
		15.MMHAP6FLE3.seq	random	65.6 F
			62	A	G
			137	T	C
	65.6 P
		D6Mit201.2	genetic marker	65.6 P
			67	G	A
	66.7 F
		12.MMHAP34FLD3.seq	random	66.7 F
			35	A	G
Chr7
	13.1 F
		15.MMHAP34FLE3.seq	random	13.1 F
			21	T	A
			76	G	A
			132	A	G
	15.3 F
		U53591	est	15.3 F
			64	T	G
	26.2 F
		04.MMHAP71FRB7.seq	random	26.2 F
			111	G	A
			117	A	G
			139	G	A
		12.MMHAP70FRD9.seq	random	26.2 F
			44	T	C
			80	G	C
		MHAa84e6.seq	random	26.2 F
			105	G	T
			116	A	G
	29.5 F
		36.MHAa92g12.seq	random	29.5 F
			72	C	A
	41.5 F
		17.MMHAP44FLF2.seq	random	41.5 F
			53	A	G
	43.7 P
		22.MMHAP75FRH7.seq	random	43.7 P
			54	A	G
Chr8
	35 F
		U13838	est	35.0 F to 35.0 P
			25	G	A
	44.8 F
		36.MMHAP61FRD12.seq	random	44.8 F
			31	C	T
Chr9
	6.6 F
		34.MMHAP23FLD4.seq	random	6.6 F
			106	G	A
	13.1 F
		28.MMHAP56FRB10.seq	random	13.1 F
			76	A	G
			147	G	A
	17.5 F
		D9Mit286.1	genetic marker	17.5 F
			44	A	G
	17.5 P
		11_27_36iis.seq	random	17.5 P
			53	C	A
	41.5 F
		40.MMHAP66FLF4.seq	random	41.5 F
			89	C	T
		MHAa52b7.seq	random	41.5 F
			60	C	T
		U49739	est	41.5 F
			29	T	C
	56.8 P
		04.MMHAP88FRB7.seq	random	56.8 P
			52	A	C
		32.MMHAP63FLC5.seq	random	56.8 P
			48	T	C
			152	G	A
	57.9 P
		D9Mit14.1	genetic marker	57.9 P
			25	G	A
			42	G	A
			119	A	C
			142	G	A
	60.1 F
		D17914	est	60.1 F
			86	G	A
Chr10
	3.3 P
		30.MMHAP29FRB12.seq	random	3.3 P
			73	C	T
	8.7 F
		41.MMHAP61FRF11.seq	random	8.7 F
			30	T	C
	16.4 F
		L10106	est	16.4 F
			140	A	G
	62.3 P
		14.MMHAP32FLE2.seq	random	62.3 P
			74	A	G
			94	T	A
	63.4 P
		14.MMHAP61FLE2.seq	random	63.4 P
			28	C	T
		D16333	est	63.4 P
			39	T	C
Chr11
	13.1 F
		21.MMHAP67FLG3.seq	random	13.1 F
			49	G	C
	19.7 F
		32.MMHAP9FLC5.seq	random	19.7 F
			136	G	A
	20.8 F
		42.MMHAP50FRF12.seq	random	20.8 F
			24	G	T
	33.9 P
		9_15_91.seq	random	33.9 P
			27	A	T
	43.7 F
		38.MMHAP58FLE5.seq	random	43.7 F
			56	T	C
	43.7 P
		D11Mit324.2	genetic marker	43.7 P
			67	A	G
	44.8 F
		D11Mit326.1	genetic marker	44.8 F
			82	G	A
	49.2 F
		Z49085	est	49.2 F
			62	C	A
			98	A	G
	50.3 F
		18.MMHAP86FRF9.seq	random	50.3 P to 50.3 F
			48	T	C
	53.6 P
		03.MMHAP28FRA9.seq	random	53.6 P
			112	T	C
		34.MHAa63g10.seq	random	53.6 P
			41	A	G
			102	T	C
	55.75 F
		45.MMHAP33FRG12.seq	random	53.6 F to 57.9 F
			35	A	G
	59.0 F
		X06762	est	59.0 F
			134	G	A
	61.2 F
		46.MMHAP76FLH4.seq	random	62.3 F to 60.1 P
			97	G	A
			176	G	A
		MHAa81g3.seq	random	62.3 F to 60.1 P
			86	G	C
	71 F
		MHAa8h1.seq	random	71.0 F to 71.0 P
			26	C	T
	79.8 P
		D11Mit103.1	genetic marker	79.8 P
			30	C	T
Chr12
	3.3 F
		D12Mit209.2	genetic marker	3.3 F
			97	T	C
	3.3 P
		47.MMHAP44FLH5.seq	random	3.3 P
			36	T	G
			59	T	C
	5.5 F
		MHAa82a4.seq	random	5.5 F
			116	A	G
	9.8 F
		38.MMHAP88FRE11.seq	random	9.8 P to 9.8 F
			100	T	C
	13.65 F
		24.MMHAP34FRH9.seq	random	13.1 F to 14.2 F
			53	T	A
	17.5 F
		X57983	est	17.5 F
			31	G	T
	23.0 F
		17.MMHAP9FRF8.seq	random	23.0 F
			36	C	T
			67	G	A
	51.4 P
		D12Mit17.1	genetic marker	51.4 P
			106	C	T
	60.1 P
		D12Mit41.1	genetic marker	60.1 P
			88	T	G
Chr13
	2.2 F
		L17324	est	2.2 F
			25	A	C
		MHAa81e12.seq	random	2.2 F
			87	T	C
		U52461	est	2.2 F
			125	A	G
	9.8 F
		13.MMHAP28FRE7.seq	random	9.8 F
			121	A	G
	15.3 F
		20.MMHAP22FRG8.seq	random	15.3 P to 15.3 F
			39	A	C
			91	T	G
	23.5 F
		16.MHAa63b4.seq	random	23.0 F to 24.0 P
			65	C	T
	24.0 F
		34.MMHAP35FRD10.seq	random	24.0 F
			39	G	A
			70	A	G
		41.MMHAP83FLF5.seq	random	24.0 F
			42	T	C
	25.1 F
		47.MHAa95d11.seq	random	25.1 F
			33	A	G
	32.8 F
		M80360	est	32.8 P to 32.8 F
			88	T	C
	37.2 F
		M62766	est	37.2 F
			25	A	G
Chr14
	0.0 P
		30.MMHAP88FRB12.seq	random	0.0 P
			29	C	T
	52.5 F
		09.MMHAP86FLC3.seq	random	52.5 F
			49	C	G
			96	A	T
			98	A	T
		26.MMHAP11FRA11.seq	random	52.5 F
			71	G	T
	63.4 F
		17.MMHAP9FLF2.seq	random	63.4 F
			24	T	A
Chr15
	16.4 F
		D15Mit139.2	genetic marker	16.4 F
			153	T	C
		mHAa57c12.seq	random	16.4 F to 16.4 P
			41	A	T
	27.3 P
		D15Mit270.1	genetic marker	27.3 P
			89	A	T
	29.5 F
		03.MMHAP35FRA9.seq	random	29.5 F
			50	T	G
	32.8 F
		M21734	est	32.8 F
			63	T	G
	56.8 F
		10.MMHAP5FLD1.seq	random	56.8 F
			143	G	A
	59 F
		M95545	est	57.9 F to 60.1 F
			48	T	C
Chr16
	3.3 F
		20.MMHAP9FLG2.seq	random	3.3 P to 3.3 F
			92	C	T
	29.5 F
		46.MMHAP31FLH4.seq	random	29.5 P to 29.5 F
			68	T	A
			90	T	C
		U13263	est	29.5 F
			26	A	T
Chr17
	6.88799 P
		MHAa34f3.seq	random	6.88799 P
			22	A	T
	10.35 F
		19.MMHAP33FRG7.seq	random	9.8 F to 10.9 F
			86	A	G
		M55637	est	9.8 F to 10.9 F
			58	G	A
			97	T	C
	10.9 F
		15.MMHAP54FLE3.seq	random	10.9 F
			150	A	C
	12.0 P
		D17Mit264.1	genetic marker	12.0 P
			32	A	T
			68	A	G
	33.9 F
		30.MMHAP66FLB6.seq	random	33.9 F
			130	T	C
		D17Mit217.3	genetic marker	33.9 F
			27	T	C
			109	T	G
		mHAa21e8.seq	random	33.9 F to 33.9 P
			155	T	G
	50.3 P
		D17Mit123.2	genetic marker	50.3 P
			26	G	T
Chr18
	4.4 P
		25.MMHAP80FLA4.seq	random	4.4 P
			140	C	T
	9.8 F
		14.MMHAP9FRE8.seq	random	9.8 F
			85	C	T
	15.85 F
		Results_ER_8_28_95_2_26.seq	random	15.3 F to 16.4 F
			82	C	T
			142	T	C
	19.7 P
		24.MMHAP33FRH9.seq	random	19.7 P
			48	G	C
	26.2 F
		27.MMHAP68FLA6.seq	random	26.2 F
			31	G	A
			63	T	C
			65	A	T
		D18Mit100.2	genetic marker	26.2 F
			61	G	A
		X76295	est	26.2 F
			29	G	A
	28.4 F
		10.MMHAP35FLD1.seq	random	28.4 F
			71	A	C
Chr19
	18.6 F
		D19Mit99.2	genetic marker	18.6 F
			40	G	A
ChrX
	24.0 P
		28.MMHAP28FRB10.seq	random	24.0 P
			23	C	T
	29.5 P
		12_5_11_6.seq	random	29.5 P
			73	G	A
	56.4206 P
		32.MMHAP94FLC5.seq	random	56.4206 P
			85	C	T

For further information contact:

Kerstin Lindblad-Toh