SNP Map Table: A/J v.s. BALB/cByJ

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:A/J	Gt:BALB/cByJ
Chr1
	15.85 F
		13.MMHAP88FRE7.seq	random	15.3 F to 16.4 F
			35	T	G
	17.5 F
		05.MMHAP9FLB2.seq	random	17.5 F
			108	T	C
	25.5124 F
		46.MMHAP82FLH4.seq	random	25.1 F to 25.9248 F
			70	C	T
	31.7 P
		41.MMHAP57FLF5.seq	random	31.7 P
			80	G	A
	32.8 F
		28.MMHAP86FRB10.seq	random	32.8 F
			119	G	T
	34.2306 F
		29.MMHAP15FLB5.seq	random	34.2306 F
			23	C	T
	37.2 F
		L23637	est	37.2 F
			54	C	T
	49.75 F
		31.MMHAP17FRC10.seq	random	49.2 P to 50.3 F
			148	G	A
			165	G	C
		MHAa21c3.seq	random	49.2 P to 50.3 F
			72	C	A
	66.7 F
		10.MMHAP84FLD1.seq	random	66.7 F
			86	C	T
	74.3 F
		D19405	est	73.2 F to 75.4 F
			38	G	A
	82.0 F
		29.MMHAP6FRB11.seq	random	82.0 F
			130	G	A
		D1Mit266.1	genetic marker	82.0 F
			23	G	A
	91.75515 F
		12.MMHAP37FRD9.seq	random	91.7103 P to 91.8 F
			21	G	A
			48	G	A
	91.8 F
		24.MMHAP87FRH9.seq	random	91.8 F
			70	G	A
		X04648	est	91.8 F
			75	A	C
			90	G	A
	91.8 P
		D1Mit455.1	genetic marker	91.8 P
			23	A	G
			32	C	T
			120	G	A
			194	C	T
	94.0 F
		X92969	est	94.0 F
			36	C	T
			46	A	G
			91	T	C
	94.0 P
		D1Mit540.1	genetic marker	94.0 P
			54	A	G
	101.6 F
		21.MMHAP97FRG9.seq	random	101.6 F
			66	G	A
		Z73151	est	101.6 F
			60	C	T
Chr2
	7.7 F
		D2Mit314S	genetic marker	7.7 F
			75	T	C
		D2Mit358S	genetic marker	7.7 F
			93	G	T
	26.75 F
		30.MMHAP97FRB12.seq	random	26.2 F to 27.3 P
			95	C	T
	27.3 F
		32.MMHAP4FLC5.seq	random	27.3 P to 27.3 F
			98	C	A
	31.7 F
		41.MMHAP45FRF11.seq	random	31.7 F
			137	T	C
	38.3 F
		41.MMHAP25FRF11.seq	random	38.3 F
			69	A	G
	44.8 F
		X60034	est	44.8 F
			138	G	T
	50.3 F
		D2Mit438.1	genetic marker	50.3 F
			81	G	T
		D43796	est	50.3 F
			28	T	C
		MHAa20b4.seq	random	50.3 F
			23	G	C
	52.45 P
		34.MMHAP46FRD10.seq	random	40.4 P to 64.5 P
			40	G	A
	57.35 F
		U22493	est	56.8 F to 57.9 F
			101	T	A
	60.1 F
		D2Mit399.1	genetic marker	60.1 F
			39	T	C
	61.2 F
		X01450	est	61.2 F
			118	A	T
		X04964	est	61.2 F
			74	C	T
			132	C	A
	73.2 F
		17.MMHAP71FRF8.seq	random	73.2 F
			30	T	C
			77	T	C
			79	G	A
			112	A	G
	98.4 F
		24.MMHAP91FLH3.seq	random	98.4 F
			49	C	T
		U09421	est	98.4 F
			101	C	T
Chr3
	9.679 P
		11.MMHAP26FRD8.seq	random	9.679 P
			99	T	C
			125	T	G
		L11316	est	9.679 P
			158	G	A
	15.3 F
		Results_ER_8_28_95_2_4.seq	random	15.3 F
			30	C	T
			47	A	G
	16.4 F
		43.MMHAP97FRG10.seq	random	16.4 F
			106	G	T
	25.1 F
		35.MMHAP59FLD5.seq	random	25.1 F
			58	A	G
	25.1 P
		10.MMHAP71FRD7.seq	random	25.1 P
			60	C	T
		D3Mit52.2	genetic marker	25.1 P
			65	A	G
	29.5 P
		D3Mit281.1	genetic marker	29.5 P
			88	G	A
			118	C	T
	33.9 F
		16.MMHAP28FLF1.seq	random	33.9 P to 33.9 F
			76	A	C
		D3Mit28.2	genetic marker	33.9 F
			27	T	C
		U04541	est	33.9 F to 33.9 P
			90	A	G
	40.4 F
		48.MMHAP22FRH12.seq	random	40.4 P to 40.4 F
			56	C	A
Chr4
	3.3 F
		X61397	est	3.3 F
			124	A	G
	50.3 F
		D17899	est	50.3 F
			70	T	A
	52.5 F
		37.MMHAP88FRE10.seq	random	52.5 F
			138	C	T
	53.6 F
		41.MMHAP25FLF5.seq	random	53.6 F
			104	G	T
	54.6 F
		18.MMHAP82FLF3.seq	random	54.6 F
			70	A	T
Chr5
	0.0 F
		MHAa7d3.seq	random	0.0 F
			39	T	A
			112	T	G
			131	T	A
	3.85 F
		29.MMHAP35FLB5.seq	random	3.3 F to 4.4 F
			155	G	A
	4.4 F
		D5Mit179.1	genetic marker	4.4 F
			46	A	C
			88	C	T
	5.5 F
		36.MMHAP17FRD12.seq	random	5.5 F
			85	A	C
	16.95 F
		06.MMHAP9FLB3.seq	random	16.4 F to 17.5 F
			34	G	T
	17.5 F
		mHAa21f10.seq	random	17.5 P to 17.5 F
			40	C	G
	18.6 F
		MHAa52c2.seq	random	18.6 F
			100	A	G
			121	A	G
	18.6 P
		MHAa84d6.seq	random	18.6 P
			95	G	T
			128	G	A
	32.8 P
		M86829	est	32.8 P
			60	C	T
			128	G	A
Chr6
	3.3 F
		06.MMHAP84FRB9.seq	random	3.3 F to 3.3 P
			64	G	A
	21.9 F
		48.MMHAP9FRH12.seq	random	21.9 F
			20	A	G
			83	C	T
			105	C	A
	29.5 F
		26.MMHAP36FLA5.seq	random	29.5 F
			157	G	T
Chr7
	26.2 F
		04.MMHAP71FRB7.seq	random	26.2 F
			111	G	A
			117	A	G
			139	G	A
		12.MMHAP70FRD9.seq	random	26.2 F
			44	T	C
			80	G	C
		14.MMHAP22FRE8.seq	random	26.2 F
			22	G	A
			38	T	C
		MHAa84e6.seq	random	26.2 F
			105	G	T
			116	A	G
	37.2 P
		17.MMHAP70FRF8.seq	random	37.2 P
			178	A	G
	41.5 F
		17.MMHAP44FLF2.seq	random	41.5 F
			26	T	C
			61	C	A
	45.9 F
		U47106	est	45.9 F
			24	C	T
	47.55 F
		12_5_1_1.seq	random	45.9 F to 49.2 F
			132	G	A
Chr8
	4.4 F
		32.MMHAP64FRC11.seq	random	4.4 F
			83	T	C
	31.7 F
		01.MMHAP58FLA1.seq	random	31.7 F
			43	A	C
	35.0 F
		D8Mit145.1	genetic marker	35.0 F
			45	G	A
		X76654	est	35.0 F
			37	A	G
	41.5 F
		23.MMHAP27FRH8.seq	random	41.5 F to 41.5 P
			106	C	T
			128	G	A
	44.8 F
		36.MMHAP61FRD12.seq	random	44.8 F
			31	C	T
Chr9
	60.1 F
		D17914	est	60.1 F
			86	G	A
Chr10
	3.3 P
		30.MMHAP29FRB12.seq	random	3.3 P
			73	C	T
Chr11
	2.2 F
		09.MMHAP48FLC3.seq	random	2.2 F
			100	A	C
	9.8 F
		03.MMHAP34FRA9.seq	random	9.8 F
			20	T	C
			34	C	T
		32.MMHAP26FRC11.seq	random	9.8 F
			143	T	C
	10.9 F
		Results_ER_9_1_95_3_31.seq	random	10.9 F
			137	T	C
	12 F
		MHAa67b4.seq	random	10.9 F to 13.1 F
			46	T	C
	13.1 F
		21.MMHAP67FLG3.seq	random	13.1 F
			49	G	C
		46.MMHAP86FRH10.seq	random	13.1 F
			20	T	C
		M84746	est	13.1 F
			57	C	T
			107	G	A
			108	G	A
	25.1 P
		D11Mit310.1	genetic marker	25.1 P
			44	C	A
	26.75 F
		15.MMHAP89FLE3.seq	random	26.2 P to 27.3 F
			120	G	A
	29.5 F
		21.MMHAP66FLG3.seq	random	29.5 F
			68	T	C
		U21226	est	29.5 F
			117	G	A
	30.6 F
		06.MMHAP36FRB9.seq	random	29.5 F to 31.7 F
			20	A	G
			75	G	A
			165	G	T
	31.7 F
		06.MMHAP23FLB3.seq	random	31.7 F
			160	C	T
		X80417	est	31.7 F
			48	C	T
	33.9 P
		9_15_91.seq	random	33.9 P
			27	A	T
	39.3 F
		22.MMHAP12FRH7.seq	random	39.3 F
			109	T	C
		MHAa67c11.seq	random	39.3 F
			26	T	A
	43.7 F
		38.MMHAP58FLE5.seq	random	43.7 F
			56	T	C
		40.MMHAP37FRF10.seq	random	43.7 F
			31	T	C
			47	T	C
	45.34105 P
		D11Mit369	genetic marker	45.34105 P
			99	G	T
	50.3 F
		18.MMHAP86FRF9.seq	random	50.3 P to 50.3 F
			48	T	C
	53.6 P
		03.MMHAP28FRA9.seq	random	53.6 P
			112	T	C
		34.MHAa63g10.seq	random	53.6 P
			41	A	G
			102	T	C
	55.75 F
		45.MMHAP33FRG12.seq	random	53.6 F to 57.9 F
			35	A	G
	59.0 F
		X06762	est	59.0 F
			134	G	A
	71 F
		MHAa8h1.seq	random	71.0 F to 71.0 P
			26	C	T
	79.8 P
		D11Mit103.1	genetic marker	79.8 P
			30	C	T
Chr12
	44.8 F
		30.MMHAP12FLB6.seq	random	44.8 P to 44.8 F
			24	T	G
			50	A	G
			80	T	C
			113	A	G
	51.4 P
		D12Mit17.1	genetic marker	51.4 P
			106	C	T
	57.35 F
		M86750	est	56.8 F to 57.9 F
			74	T	C
	60.1 P
		D12Mit41.1	genetic marker	60.1 P
			88	T	G
Chr13
	23.5 F
		16.MHAa63b4.seq	random	23.0 F to 24.0 P
			65	C	T
	24.0 F
		30.MMHAP28FLB6.seq	random	24.0 F
			69	A	G
		40.MMHAP84FRF10.seq	random	24.0 F
			77	G	A
			97	A	T
		41.MMHAP83FLF5.seq	random	24.0 F
			42	T	C
	31.7 P
		D13Mit104.2	genetic marker	31.7 P
			63	A	G
	37.2 F
		M62766	est	37.2 F
			25	A	G
	37.75 F
		06.MMHAP34FLB3.seq	random	37.2 F to 38.3 F
			61	G	T
	39.3 P
		45.MMHAP5FRG12.seq	random	39.3 P
			51	T	A
	50.3 P
		D13Mit150.2	genetic marker	50.3 P
			53	G	A
	53.6 F
		09.MMHAP94FLC3.seq	random	53.6 F
			70	A	G
Chr14
	0.0 P
		30.MMHAP88FRB12.seq	random	0.0 P
			29	C	T
	7.15 F
		U30838	est	6.6 F to 7.7 F
			95	C	T
	63.4 F
		17.MMHAP9FLF2.seq	random	63.4 F
			24	T	A
Chr15
	5.5 F
		42.MMHAP59FLF6.seq	random	5.5 F
			36	A	G
	10.9 F
		03.MMHAP70FRA9.seq	random	10.9 F
			25	T	A
			50	G	A
			81	G	C
			98	T	C
	13.65 F
		02.MMHAP94FLA2.seq	random	13.1 F to 14.2 F
			131	C	T
	16.4 F
		mHAa57c12.seq	random	16.4 F to 16.4 P
			41	A	T
	17.5 F
		45.MMHAP36FRG12.seq	random	17.5 F
			54	T	C
			84	A	T
	27.3 P
		D15Mit270.1	genetic marker	27.3 P
			89	A	T
	59 F
		M95545	est	57.9 F to 60.1 F
			48	T	C
	61.2 P
		D15Mit97.2	genetic marker	61.2 P
			50	C	T
Chr16
	3.3 F
		20.MMHAP9FLG2.seq	random	3.3 P to 3.3 F
			92	C	T
	51.4 P
		MHAa29a8.seq	random	51.4 P
			62	C	T
			74	A	T
Chr17
	10.35 F
		19.MMHAP33FRG7.seq	random	9.8 F to 10.9 F
			86	A	G
		M55637	est	9.8 F to 10.9 F
			58	G	A
			97	T	C
	10.9 F
		15.MMHAP54FLE3.seq	random	10.9 F
			118	G	A
			150	A	C
	14.2 F
		D18369	est	14.2 F
			121	A	T
Chr18
	4.4 P
		25.MMHAP80FLA4.seq	random	4.4 P
			140	C	T
	9.8 F
		14.MMHAP9FRE8.seq	random	9.8 F
			24	T	C
			41	G	T
			60	A	G
			74	T	A
			85	C	T
		MHAa84h6.seq	random	9.8 F
			132	A	C
		X58995	est	9.8 F to 9.8 P
			39	A	T
			102	G	T
	9.8 P
		40.MMHAP11FRF10.seq	random	9.8 P
			101	T	G
	14.75 F
		27.MMHAP16FRA12.seq	random	14.2 F to 15.3 F
			125	T	G
	15.85 F
		Results_ER_8_28_95_2_26.seq	random	15.3 F to 16.4 F
			82	C	T
			142	T	C
	19.7 F
		MHAa30e3.seq	random	19.7 F to 19.7 P
			63	A	G
	19.7 P
		24.MMHAP33FRH9.seq	random	19.7 P
			48	G	C
	28.4 F
		10.MMHAP35FLD1.seq	random	28.4 F
			71	A	C
Chr19
	13.1 F
		D19Mit16.1	genetic marker	13.1 F
			35	T	G
	18.6 F
		D19Mit99.2	genetic marker	18.6 F
			86	A	G
	57.9 F
		X84651	est	57.9 F
			148	G	A

For further information contact:

Kerstin Lindblad-Toh