SNP Map Table: A/J v.s. AKR/J

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:A/J	Gt:AKR/J
Chr1
	17.5 F
		05.MMHAP9FLB2.seq	random	17.5 F
			108	T	C
		MHAa78e6.seq	random	17.5 F
			120	G	T
	25.1 P
		24.MMHAP29FRH9.seq	random	25.1 P
			130	C	T
	25.5124 F
		46.MMHAP82FLH4.seq	random	25.1 F to 25.9248 F
			63	G	C
	25.9248 F
		33.MMHAP34FRC12.seq	random	25.9248 F
			117	A	G
	31.7 P
		41.MMHAP57FLF5.seq	random	31.7 P
			80	G	A
	37.2 F
		L23637	est	37.2 F
			54	C	T
	42.05 F
		M89800	est	42.6 F to 41.5 F
			108	A	G
	49.75 F
		31.MMHAP17FRC10.seq	random	49.2 P to 50.3 F
			148	G	A
			165	G	C
		MHAa21c3.seq	random	49.2 P to 50.3 F
			72	C	A
	51.4 F
		D1Mit53.2	genetic marker	51.4 F
			22	C	G
	59.0 F
		39.MMHAP54FLE6.seq	random	59.0 F
			59	T	C
	73.2 P
		07.MMHAP61FRC7.seq	random	73.2 P
			117	T	G
		20.MHAa96b8.seq	random	73.2 P
			96	T	C
		D1Mit31.1	genetic marker	73.2 P
			26	C	T
	74.3 F
		41.MMHAP84FRF11.seq	random	75.4 F to 73.2 P
			63	G	A
			67	A	G
	75.4 F
		43.MMHAP26FRG10.seq	random	75.4 F
			106	A	G
	82.0 F
		D1Mit424.1	genetic marker	82.0 F
			24	A	G
	91.75515 F
		12.MMHAP37FRD9.seq	random	91.7103 P to 91.8 F
			21	G	A
			48	G	A
	91.8 F
		24.MMHAP87FRH9.seq	random	91.8 F
			70	G	A
		X04648	est	91.8 F
			75	A	C
			90	G	A
	91.8 P
		D1Mit455.1	genetic marker	91.8 P
			23	A	G
			32	C	T
			120	G	A
			194	C	T
	94.0 F
		X92969	est	94.0 F
			36	C	T
			46	A	G
			91	T	C
	100.5 P
		MHAa54g11.seq	random	100.5 P
			130	C	T
			161	G	A
	101.6 F
		21.MMHAP97FRG9.seq	random	101.6 F
			66	G	A
Chr2
	7.7 F
		D2Mit314S	genetic marker	7.7 F
			75	T	C
		D2Mit358S	genetic marker	7.7 F
			93	G	T
	38.3 F
		41.MMHAP25FRF11.seq	random	38.3 F
			69	A	G
	44.8 F
		X60034	est	44.8 F
			138	G	T
	50.3 F
		33.MMHAP63FLC6.seq	random	50.3 F
			52	G	A
		D2Mit438.1	genetic marker	50.3 F
			81	G	T
		D43796	est	50.3 F
			28	T	C
			115	G	A
		MHAa20b4.seq	random	50.3 F
			23	G	C
	51.4 F
		01.MMHAP26FRA7.seq	random	50.3 P to 52.5 F
			68	T	A
	55.7 F
		38.MMHAP33FRE11.seq	random	55.7 F
			128	A	G
	59.0 F
		27.MMHAP25FLA6.seq	random	59.0 F
			131	C	T
	60.1 F
		D2Mit399.1	genetic marker	60.1 F
			39	T	C
	61.2 F
		X01450	est	61.2 F
			118	A	T
	66.7 F
		27.MMHAP59FLA6.seq	random	66.7 F
			65	A	G
			138	A	G
		D2Mit404.1	genetic marker	66.7 F
			24	A	G
	72.1 F
		D2Mit284.4	genetic marker	72.1 F
			59	T	C
	74.3 P
		U27177	est	74.3 P
			177	A	G
	83.65 F
		27.MMHAP64FLA6.seq	random	83.1 F to 84.2 F
			54	A	G
Chr3
	16.4 F
		43.MMHAP97FRG10.seq	random	16.4 F
			106	G	T
	17.5 P
		26.MMHAP20FRA11.seq	random	17.5 P
			38	T	G
		44.MMHAP7FLG5.seq	random	17.5 P
			28	G	A
			56	A	G
	25.1 F
		35.MMHAP59FLD5.seq	random	25.1 F
			58	A	G
	25.1 P
		10.MMHAP71FRD7.seq	random	25.1 P
			60	C	T
	29.5 P
		D3Mit281.1	genetic marker	29.5 P
			88	G	A
			118	C	T
			153	G	A
	40.4 F
		48.MMHAP22FRH12.seq	random	40.4 P to 40.4 F
			56	C	A
	42.6 F
		X92122	est	42.6 P to 42.6 F
			49	A	G
	44.8 F
		24.MMHAP9FLH3.seq	random	44.8 F
			132	C	T
	47.55 F
		08.MMHAP28FRC8.seq	random	47.0 P to 48.1 F
			50	A	G
			123	A	T
	49.2 F
		D3Mit160.2	genetic marker	49.2 F
			82	G	A
		M63961	est	49.2 F
			124	A	G
	50.85 F
		MHAa82d4.seq	random	51.4 F to 50.3 P
			115	C	G
Chr4
	3.3 F
		X61397	est	3.3 F
			124	A	G
	18.6 F
		19.MMHAP88FRG7.seq	random	18.6 F
			56	G	A
	31.15 F
		34.MHAa65T_M13Rev.seq	random	30.6 F to 31.7 F
			149	C	A
	31.7 F
		33.MMHAP15FLC6.seq	random	31.7 F
			87	T	A
		X03687	est	31.7 F to 31.7 P
			36	C	T
			108	G	T
	35.0 P
		MHAa54a7.seq	random	35.0 P
			83	C	T
		X01971	est	35.0 P
			145	T	A
	39.3 F
		MHAa78e1.seq	random	39.3 F to 39.3 P
			149	T	C
	50.3 F
		D17899	est	50.3 F
			70	T	A
	52.5 F
		37.MMHAP88FRE10.seq	random	52.5 F
			109	G	A
	53.6 F
		41.MMHAP25FLF5.seq	random	53.6 F
			104	G	T
	54.6 F
		18.MMHAP82FLF3.seq	random	54.6 F
			70	A	T
Chr5
	0.0 F
		MHAa7d3.seq	random	0.0 F
			39	T	A
			112	T	G
			131	T	A
	4.4 F
		D5Mit179.1	genetic marker	4.4 F
			46	A	C
			88	C	T
	27.3 F
		D43963	est	27.3 F
			80	T	C
	32.8 P
		M86829	est	32.8 P
			60	C	T
			128	G	A
	38.3 P
		D5Mit115	genetic marker	38.3 P
			33	A	T
	66.7 F
		34.MMHAP64FRD10.seq	random	66.7 F
			42	C	T
		D5Mit33.2	genetic marker	66.7 F
			48	A	G
			86	A	T
	74.3 F
		22.MMHAP91FLH1.seq	random	74.3 F
			28	G	A
	77.6 P
		11.MMHAP20FRD8.seq	random	77.6 P
			28	A	G
	81.37419 F
		U28724	est	76.5 F to 86.24838 P
			35	G	A
Chr6
	12.0 P
		L08757	est	12.0 P
			162	G	A
		U20371	est	12.0 P
			136	T	G
	13.1 P
		D6Mit183.1	genetic marker	13.1 P
			81	C	T
	21.9 F
		48.MMHAP9FRH12.seq	random	21.9 F
			20	A	G
			83	C	T
			105	C	A
	23.0 F
		36.MMHAP26FRD12.seq	random	23.0 F
			108	C	A
	29.5 F
		26.MMHAP36FLA5.seq	random	29.5 F
			157	G	T
	36.9555 P
		28.MMHAP38FRB10.seq	random	40.011 P to 33.9 P
			20	T	A
			102	A	G
			124	A	C
	42.6 F
		44.MMHAP85FLG5.seq	random	41.5 F to 43.7 F
			63	A	G
	43.7 P
		44.MMHAP27FRG11.seq	random	43.7 P
			122	T	C
			123	T	C
	45.9 P
		15.MHAa10f3.seq	random	45.9 P
			90	T	C
	47.0 F
		28.MMHAP6FRB10.seq	random	47.0 F
			62	C	T
			118	C	A
		30.MMHAP30FLB6.seq	random	47.0 F
			131	T	C
		32.MMHAP4FRC11.seq	random	47.0 F
			119	T	C
	49.2 F
		16.MMHAP67FLF1.seq	random	49.2 F
			49	C	T
	63.4 F
		03.MMHAP54FRA9.seq	random	63.4 F to 63.4 P
			52	G	T
		35.MMHAP94FLD5.seq	random	63.4 F to 63.4 P
			104	C	T
	63.4 P
		D6Mit371.4	genetic marker	63.4 P
			34	A	G
			73	A	G
	65.05 F
		MHAa52a5.seq	random	63.4 P to 66.7 F
			36	T	C
			110	T	C
	65.6 F
		15.MMHAP6FLE3.seq	random	65.6 F
			62	G	A
			137	C	T
	65.6 P
		D6Mit201.2	genetic marker	65.6 P
			67	A	G
	66.7 F
		12.MMHAP34FLD3.seq	random	66.7 F
			35	G	A
Chr7
	13.1 F
		15.MMHAP34FLE3.seq	random	13.1 F
			21	A	T
			76	A	G
			132	G	A
	15.3 F
		U53591	est	15.3 F
			64	G	T
	26.2 F
		14.MMHAP22FRE8.seq	random	26.2 F
			22	G	A
			38	T	C
	29.5 F
		36.MHAa92g12.seq	random	29.5 F
			72	A	C
	37.2 P
		17.MMHAP70FRF8.seq	random	37.2 P
			178	A	G
	41.5 F
		17.MMHAP44FLF2.seq	random	41.5 F
			26	T	C
			53	G	A
			61	C	A
	43.7 P
		22.MMHAP75FRH7.seq	random	43.7 P
			54	G	A
	45.9 F
		U47106	est	45.9 F
			24	C	T
	47.55 F
		12_5_1_1.seq	random	45.9 F to 49.2 F
			132	G	A
Chr8
	4.4 F
		32.MMHAP64FRC11.seq	random	4.4 F
			83	T	C
	31.7 F
		01.MMHAP58FLA1.seq	random	31.7 F
			43	A	C
	35.0 F
		D8Mit145.1	genetic marker	35.0 F
			45	G	A
		X76654	est	35.0 F
			37	A	G
	35 F
		U13838	est	35.0 F to 35.0 P
			25	A	G
	41.5 F
		23.MMHAP27FRH8.seq	random	41.5 F to 41.5 P
			106	C	T
			128	G	A
Chr9
	6.6 F
		34.MMHAP23FLD4.seq	random	6.6 F
			106	A	G
	13.1 F
		28.MMHAP56FRB10.seq	random	13.1 F
			76	G	A
			147	A	G
	17.5 F
		D9Mit286.1	genetic marker	17.5 F
			44	G	A
	17.5 P
		11_27_36iis.seq	random	17.5 P
			53	A	C
	41.5 F
		40.MMHAP66FLF4.seq	random	41.5 F
			89	T	C
		MHAa52b7.seq	random	41.5 F
			60	T	C
		U49739	est	41.5 F
			29	C	T
	56.8 P
		04.MMHAP88FRB7.seq	random	56.8 P
			52	C	A
		32.MMHAP63FLC5.seq	random	56.8 P
			48	C	T
			152	A	G
	57.9 F
		01.MMHAP90FRA7.seq	random	57.9 F
			33	T	C
			96	C	T
	57.9 P
		D9Mit14.1	genetic marker	57.9 P
			25	A	G
			42	A	G
			119	C	A
			142	A	G
Chr10
	8.7 F
		41.MMHAP61FRF11.seq	random	8.7 F
			30	C	T
	16.4 F
		L10106	est	16.4 F
			140	G	A
	62.3 P
		14.MMHAP32FLE2.seq	random	62.3 P
			74	G	A
			94	A	T
	63.4 P
		14.MMHAP61FLE2.seq	random	63.4 P
			28	T	C
		D16333	est	63.4 P
			39	C	T
Chr11
	2.2 F
		09.MMHAP48FLC3.seq	random	2.2 F
			100	A	C
	9.8 F
		03.MMHAP34FRA9.seq	random	9.8 F
			20	T	C
			34	C	T
		32.MMHAP26FRC11.seq	random	9.8 F
			143	T	C
	10.9 F
		Results_ER_9_1_95_3_31.seq	random	10.9 F
			137	T	C
	12 F
		MHAa67b4.seq	random	10.9 F to 13.1 F
			46	T	C
	13.1 F
		46.MMHAP86FRH10.seq	random	13.1 F
			20	T	C
		M84746	est	13.1 F
			57	C	T
			107	G	A
			108	G	A
	19.7 F
		32.MMHAP9FLC5.seq	random	19.7 F
			136	A	G
	20.8 F
		42.MMHAP50FRF12.seq	random	20.8 F
			24	T	G
	25.1 P
		D11Mit310.1	genetic marker	25.1 P
			44	C	A
	26.75 F
		15.MMHAP89FLE3.seq	random	26.2 P to 27.3 F
			120	G	A
	29.5 F
		21.MMHAP66FLG3.seq	random	29.5 F
			68	T	C
		U21226	est	29.5 F
			117	G	A
	30.6 F
		06.MMHAP36FRB9.seq	random	29.5 F to 31.7 F
			20	A	G
			75	G	A
			165	G	T
	31.7 F
		06.MMHAP23FLB3.seq	random	31.7 F
			160	C	T
		X80417	est	31.7 F
			48	C	T
	39.3 F
		22.MMHAP12FRH7.seq	random	39.3 F
			109	T	C
		MHAa67c11.seq	random	39.3 F
			26	T	A
	43.7 F
		40.MMHAP37FRF10.seq	random	43.7 F
			31	T	C
			47	T	C
	43.7 P
		D11Mit324.2	genetic marker	43.7 P
			67	G	A
	44.8 F
		D11Mit326.1	genetic marker	44.8 F
			82	A	G
	45.34105 P
		D11Mit369	genetic marker	45.34105 P
			99	G	T
	49.2 F
		Z49085	est	49.2 F
			62	A	C
			98	G	A
	61.2 F
		46.MMHAP76FLH4.seq	random	62.3 F to 60.1 P
			97	A	G
			176	A	G
		MHAa81g3.seq	random	62.3 F to 60.1 P
			86	C	G
	62.3 F
		D11Mit59.2	genetic marker	62.3 F
			56	A	C
Chr12
	3.3 F
		D12Mit209.2	genetic marker	3.3 F
			97	C	T
	3.3 P
		47.MMHAP44FLH5.seq	random	3.3 P
			36	G	T
			59	C	T
	5.5 F
		MHAa82a4.seq	random	5.5 F
			116	G	A
	9.8 F
		38.MMHAP88FRE11.seq	random	9.8 P to 9.8 F
			100	C	T
	13.65 F
		24.MMHAP34FRH9.seq	random	13.1 F to 14.2 F
			53	A	T
	17.5 F
		X57983	est	17.5 F
			31	T	G
	23.0 F
		17.MMHAP9FRF8.seq	random	23.0 F
			36	T	C
			67	A	G
	44.8 F
		30.MMHAP12FLB6.seq	random	44.8 P to 44.8 F
			24	T	G
			50	A	G
			80	T	C
			113	A	G
	57.35 F
		M86750	est	56.8 F to 57.9 F
			74	T	C
Chr13
	2.2 F
		L17324	est	2.2 F
			25	C	A
		MHAa81e12.seq	random	2.2 F
			87	C	T
		U52461	est	2.2 F
			125	G	A
	9.8 F
		13.MMHAP28FRE7.seq	random	9.8 F
			121	G	A
	15.3 F
		20.MMHAP22FRG8.seq	random	15.3 P to 15.3 F
			39	C	A
			91	G	T
	24.0 F
		30.MMHAP28FLB6.seq	random	24.0 F
			69	A	G
		34.MMHAP35FRD10.seq	random	24.0 F
			39	A	G
			70	G	A
		40.MMHAP84FRF10.seq	random	24.0 F
			77	G	A
			97	A	T
	25.1 F
		47.MHAa95d11.seq	random	25.1 F
			33	G	A
	31.7 P
		D13Mit104.2	genetic marker	31.7 P
			63	A	G
	32.8 F
		M80360	est	32.8 P to 32.8 F
			88	C	T
	37.75 F
		06.MMHAP34FLB3.seq	random	37.2 F to 38.3 F
			61	G	T
	39.3 P
		45.MMHAP5FRG12.seq	random	39.3 P
			51	T	A
	50.3 P
		D13Mit150.2	genetic marker	50.3 P
			53	G	A
	53.6 F
		09.MMHAP94FLC3.seq	random	53.6 F
			70	A	G
Chr14
	52.5 F
		09.MMHAP86FLC3.seq	random	52.5 F
			49	G	C
			96	T	A
			98	T	A
		26.MMHAP11FRA11.seq	random	52.5 F
			71	T	G
Chr15
	5.5 F
		42.MMHAP59FLF6.seq	random	5.5 F
			36	A	G
	13.65 F
		02.MMHAP94FLA2.seq	random	13.1 F to 14.2 F
			131	C	T
	16.4 F
		D15Mit139.2	genetic marker	16.4 F
			153	C	T
	17.5 F
		45.MMHAP36FRG12.seq	random	17.5 F
			54	T	C
			84	A	T
	29.5 F
		03.MMHAP35FRA9.seq	random	29.5 F
			50	G	T
	32.8 F
		M21734	est	32.8 F
			63	G	T
	56.8 F
		10.MMHAP5FLD1.seq	random	56.8 F
			143	A	G
	61.2 P
		D15Mit97.2	genetic marker	61.2 P
			50	C	T
Chr16
	29.5 F
		46.MMHAP31FLH4.seq	random	29.5 P to 29.5 F
			68	A	T
			90	C	T
		U13263	est	29.5 F
			26	T	A
	51.4 P
		MHAa29a8.seq	random	51.4 P
			62	C	T
			74	A	T
Chr17
	6.88799 P
		MHAa34f3.seq	random	6.88799 P
			22	T	A
	12.0 P
		D17Mit264.1	genetic marker	12.0 P
			32	T	A
			68	G	A
	14.2 F
		D18369	est	14.2 F
			121	A	T
	33.9 F
		30.MMHAP66FLB6.seq	random	33.9 F
			130	C	T
		D17Mit217.3	genetic marker	33.9 F
			27	C	T
			109	G	T
		mHAa21e8.seq	random	33.9 F to 33.9 P
			155	G	T
	50.3 P
		D17Mit123.2	genetic marker	50.3 P
			26	T	G
Chr18
	9.8 F
		14.MMHAP9FRE8.seq	random	9.8 F
			24	T	C
			41	G	T
			60	A	G
			74	T	A
		MHAa84h6.seq	random	9.8 F
			132	A	C
		X58995	est	9.8 F to 9.8 P
			39	A	T
			102	G	T
	9.8 P
		40.MMHAP11FRF10.seq	random	9.8 P
			101	T	G
	14.75 F
		27.MMHAP16FRA12.seq	random	14.2 F to 15.3 F
			125	T	G
	19.7 F
		MHAa30e3.seq	random	19.7 F to 19.7 P
			63	A	G
	26.2 F
		27.MMHAP68FLA6.seq	random	26.2 F
			31	A	G
			63	C	T
			65	T	A
		D18Mit100.2	genetic marker	26.2 F
			61	A	G
		X76295	est	26.2 F
			29	A	G
Chr19
	13.1 F
		D19Mit16.1	genetic marker	13.1 F
			35	T	G
	18.6 F
		D19Mit99.2	genetic marker	18.6 F
			40	A	G
			86	A	G
	57.9 F
		X84651	est	57.9 F
			148	G	A
ChrX
	24.0 P
		28.MMHAP28FRB10.seq	random	24.0 P
			23	T	C
	29.5 P
		12_5_11_6.seq	random	29.5 P
			73	A	G
	56.4206 P
		32.MMHAP94FLC5.seq	random	56.4206 P
			85	T	C

For further information contact:

Kerstin Lindblad-Toh