SNP Map Table: 129/Sv v.s. A/J

Unassigned SNPs are included in the FTP tables

Chromosome
	GenDist(avg)
		Fragment	Source	GenDist
			SnpPos	Gt:129/Sv	Gt:A/J
Chr1
	17.5 F
		05.MMHAP9FLB2.seq	random	17.5 F
			108	C	T
	66.7 F
		10.MMHAP84FLD1.seq	random	66.7 F
			86	T	C
	73.2 P
		07.MMHAP61FRC7.seq	random	73.2 P
			117	G	T
		20.MHAa96b8.seq	random	73.2 P
			96	C	T
		D1Mit31.1	genetic marker	73.2 P
			26	T	C
	74.3 P
		16.MMHAP84FRF7.seq	random	74.3 P
			102	G	A
	75.4 F
		43.MMHAP26FRG10.seq	random	75.4 F
			106	G	A
	91.75515 F
		12.MMHAP37FRD9.seq	random	91.7103 P to 91.8 F
			48	A	G
			93	G	A
			121	A	G
	94.0 F
		X92969	est	94.0 F
			36	T	C
			46	G	A
			91	C	T
	101.6 F
		21.MMHAP97FRG9.seq	random	101.6 F
			66	A	G
		Z73151	est	101.6 F
			60	T	C
Chr2
	7.7 F
		D2Mit314S	genetic marker	7.7 F
			75	C	T
		D2Mit358S	genetic marker	7.7 F
			93	T	G
	26.75 F
		30.MMHAP97FRB12.seq	random	26.2 F to 27.3 P
			95	T	C
	38.3 F
		41.MMHAP25FRF11.seq	random	38.3 F
			69	G	A
	44.8 F
		X60034	est	44.8 F
			138	T	G
	48.65 F
		Z17804	est	49.2 P to 48.1 F
			55	T	C
	50.3 F
		D2Mit438.1	genetic marker	50.3 F
			81	T	G
		MHAa20b4.seq	random	50.3 F
			23	C	G
	51.4 F
		01.MMHAP6FLA1.seq	random	51.4 F
			119	G	A
	52.5 F
		46.MMHAP59FLH4.seq	random	52.5 F
			124	A	T
	55.7 F
		38.MMHAP33FRE11.seq	random	55.7 F
			128	G	A
	59.0 F
		27.MMHAP25FLA6.seq	random	59.0 F
			131	T	C
	60.1 F
		D2Mit399.1	genetic marker	60.1 F
			39	C	T
	66.7 F
		13.MMHAP61FRE7.seq	random	66.7 F
			46	A	C
		27.MMHAP59FLA6.seq	random	66.7 F
			65	G	A
			138	G	A
		D2Mit404.1	genetic marker	66.7 F
			24	G	A
	70.58879 F
		M55669	est	74.47758 P to 66.7 F
			53	A	G
	72.1 F
		D2Mit284.4	genetic marker	72.1 F
			59	C	T
	73.2 F
		17.MMHAP71FRF8.seq	random	73.2 F
			30	C	T
			77	C	T
			79	A	G
			112	G	A
	78.15 F
		26.MHAa77c2.seq	random	77.6 F to 78.7 F
			42	G	A
	83.65 F
		27.MMHAP64FLA6.seq	random	83.1 F to 84.2 F
			54	G	A
	98.4 F
		24.MMHAP91FLH3.seq	random	98.4 F
			49	T	C
		U09421	est	98.4 F
			101	T	C
Chr3
	9.679 P
		11.MMHAP26FRD8.seq	random	9.679 P
			99	C	T
			125	G	T
		L11316	est	9.679 P
			158	A	G
	17.5 P
		08.MMHAP18FRC8.seq	random	17.5 P
			103	C	T
		26.MMHAP20FRA11.seq	random	17.5 P
			120	C	T
		44.MMHAP7FLG5.seq	random	17.5 P
			56	G	A
	25.1 F
		35.MMHAP59FLD5.seq	random	25.1 F
			58	G	A
	25.1 P
		10.MMHAP71FRD7.seq	random	25.1 P
			60	T	C
		D3Mit52.2	genetic marker	25.1 P
			65	G	A
	36.1 F
		D3Mit157.2	genetic marker	36.1 F
			82	C	T
	40.4 F
		34.MMHAP22FRD10.seq	random	40.4 F
			109	T	C
	42.6 F
		X92122	est	42.6 P to 42.6 F
			49	G	A
	44.8 F
		24.MMHAP9FLH3.seq	random	44.8 F
			132	T	C
	47.0 F
		D3Mit195.2	genetic marker	47.0 F
			35	G	A
			76	A	G
	50.85 F
		MHAa82d4.seq	random	51.4 F to 50.3 P
			115	G	C
Chr4
	3.3 F
		X61397	est	3.3 F
			124	G	A
	23.0 P
		09.MMHAP37FRC9.seq	random	23.0 P
			96	T	C
	30.6 P
		17.MMHAP91FLF2.seq	random	30.6 P
			20	G	A
			126	T	A
	31.7 F
		33.MMHAP15FLC6.seq	random	31.7 F
			87	A	T
		X03687	est	31.7 F to 31.7 P
			108	T	G
	35 P
		13.MMHAP64FLE1.seq	random	33.9 P to 36.1 P
			30	G	A
			81	T	A
	39.3 F
		MHAa78e1.seq	random	39.3 F to 39.3 P
			149	C	T
	53.6 F
		41.MMHAP25FLF5.seq	random	53.6 F
			104	T	G
	54.6 F
		18.MMHAP82FLF3.seq	random	54.6 F
			70	T	A
	59.0 P
		37.MMHAP33FRE10.seq	random	59.0 P
			68	C	A
	61.2 F
		U51112	est	61.2 F
			52	C	T
	71.0 P
		27.MMHAP7FRA12.seq	random	71.0 P
			64	G	A
		46.MHAa56h10.seq	random	71.0 P
			87	T	A
		X78339	est	71.0 P
			111	A	G
Chr5
	0.0 F
		MHAa7d3.seq	random	0.0 F
			112	G	T
			131	A	T
	4.4 F
		D5Mit179.1	genetic marker	4.4 F
			46	C	A
			88	T	C
	5.5 F
		36.MMHAP17FRD12.seq	random	5.5 F
			85	C	A
	8.7 F
		32.MMHAP62FLC5.seq	random	8.7 F
			96	C	T
	18.6 F
		03.MMHAP95FRA9.seq	random	18.6 F
			21	C	T
		MHAa52c2.seq	random	18.6 F
			100	G	A
			121	G	A
	18.6 P
		MHAa84d6.seq	random	18.6 P
			95	T	G
			128	A	G
	25.1 F
		33.MMHAP28FLC6.seq	random	25.1 F
			122	T	C
	25.65 F
		MHAa35a12.seq	random	25.1 F to 26.2 F
			126	C	T
	37.75 F
		L23801	est	37.2 P to 38.3 F
			138	G	A
	38.3 P
		D5Mit115	genetic marker	38.3 P
			33	T	A
	77.6 P
		11.MMHAP20FRD8.seq	random	77.6 P
			28	G	A
	81.37419 F
		U28724	est	76.5 F to 86.24838 P
			35	A	G
Chr6
	3.3 F
		M60493	est	3.3 F
			63	A	G
			110	G	A
		MHAa82a9.seq	random	3.3 F
			121	C	T
	6.6 F
		MHAa75g2.seq	random	6.6 F
			42	T	C
			114	G	A
			133	A	C
	12.0 P
		L08757	est	12.0 P
			162	A	G
		U20371	est	12.0 P
			136	G	T
	13.1 P
		D6Mit183.1	genetic marker	13.1 P
			81	T	C
	36.9555 P
		28.MMHAP38FRB10.seq	random	40.011 P to 33.9 P
			20	A	T
			102	G	A
			124	C	A
	40.4 F
		20.MMHAP85FLG2.seq	random	40.4 P to 40.4 F
			53	C	T
			137	G	A
		MHAa54c9.seq	random	40.4 F to 40.4 P
			128	G	A
	43.7 P
		44.MMHAP27FRG11.seq	random	43.7 P
			123	C	T
	66.7 F
		M23236	est	66.7 F to Tel
			98	T	A
Chr7
	1.1 F
		27.MMHAP70FLA6.seq	random	1.1 F to 1.1 P
			120	T	A
	5.5 F
		M21856	est	5.5 F
			103	T	A
	12.0 F
		26.MMHAP57FLA5.seq	random	12.0 F
			106	T	C
			125	C	A
		MHAa20d2.seq	random	12.0 F
			95	A	C
	13.1 F
		15.MMHAP34FLE3.seq	random	13.1 F
			21	T	A
			76	G	A
			132	A	G
	15.3 F
		23.MMHAP35FRH8.seq	random	15.3 F
			48	C	G
			55	G	T
		D17813	est	15.3 F
			98	T	C
			131	A	G
		U53591	est	15.3 F
			64	T	G
	18.6 F
		D7Mit27.2	genetic marker	18.6 F
			73	A	T
		D7Mit28	genetic marker	18.6 F
			58	T	A
			80	A	G
			100	C	T
		D7Mit29	genetic marker	18.6 F
			150	T	C
		X94616	est	18.6 F
			51	T	C
	18.6 P
		D19306	est	18.6 P
			143	C	T
	21.3 F
		U28217	est	18.6 F to 24.0 P
			141	G	A
	21.35 F
		20.MMHAP7FLG2.seq	random	20.8 F to 21.9 F
			54	T	A
	25.1 F
		23.MMHAP64FLH2.seq	random	25.1 F
			62	C	T
			125	C	T
	25.1 P
		D7Mit195.2	genetic marker	25.1 P
			67	G	A
	26.2 F
		04.MMHAP71FRB7.seq	random	26.2 F
			111	A	G
			117	G	A
			139	A	G
		12.MMHAP70FRD9.seq	random	26.2 F
			44	C	T
			80	C	G
		14.MMHAP22FRE8.seq	random	26.2 F
			22	A	G
		33.MMHAP27FRC12.seq	random	26.2 F
			77	G	T
		MHAa54e9.seq	random	26.2 F
			37	T	C
	29.5 F
		36.MHAa92g12.seq	random	29.5 F
			72	C	A
	30.6 F
		Results_ER_8_28_95_1___169.seq	random	30.6 F
			23	G	T
			48	A	G
	33.9 F
		20.MMHAP4FRG8.seq	random	33.9 F
			40	G	A
			101	A	G
			126	C	T
	37.2 P
		17.MMHAP70FRF8.seq	random	37.2 P
			178	G	A
	41.5 F
		17.MMHAP44FLF2.seq	random	41.5 F
			26	C	T
			61	A	C
		31.MMHAP26FRC10.seq	random	41.5 F
			40	T	G
			76	A	G
		36.MMHAP70FLD6.seq	random	41.5 F
			46	C	G
			67	G	A
	42.6 F
		46.MMHAP57FLH4.seq	random	42.6 F
			71	C	T
			133	G	T
		D18377	est	42.6 F
			69	G	C
			130	T	C
	43.7 P
		22.MMHAP75FRH7.seq	random	43.7 P
			54	A	G
	45.9 F
		U47106	est	45.9 F
			24	T	C
	47.55 F
		12_5_1_1.seq	random	45.9 F to 49.2 F
			132	A	G
	49.2 P
		21.MMHAP6FLG3.seq	random	49.2 P
			74	C	T
	49.75 P
		07.MMHAP85FRC7.seq	random	49.2 P to 50.3 P
			73	A	G
			142	T	C
Chr8
	0.55 P
		28.MMHAP45FLB4.seq	random	0.0 P to 1.1 P
			107	A	G
			111	G	T
		MHAa28g7.seq	random	0.0 P to 1.1 P
			72	G	A
	2.75 P
		MHAa54e7.seq	random	1.1 P to 4.4 P
			172	G	A
	4.4 F
		11.MMHAP87FLD2.seq	random	4.4 F
			26	G	A
		46.MHAa63h10.seq	random	4.4 F
			63	A	G
			109	A	G
	35.0 F
		D8Mit145.1	genetic marker	35.0 F
			45	A	G
		X76654	est	35.0 F
			37	G	A
	41.5 F
		23.MMHAP27FRH8.seq	random	41.5 F to 41.5 P
			106	T	C
			128	A	G
	44.8 F
		36.MMHAP61FRD12.seq	random	44.8 F
			31	T	C
	73.75 F
		14.MMHAP71FRE8.seq	random	73.2 F to 74.3 F
			46	T	G
Chr9
	4.4 P
		19.MMHAP29FRG7.seq	random	4.4 P
			31	A	G
	17.5 P
		11_27_36iis.seq	random	17.5 P
			53	C	A
	20.8 F
		Y00635	est	20.8 F to 20.8 P
			135	G	A
	39.3 F
		X99273	est	39.3 F to 39.3 P
			29	C	T
	57.9 F
		01.MMHAP90FRA7.seq	random	57.9 F
			33	C	T
			96	T	C
	57.9 P
		D9Mit14.1	genetic marker	57.9 P
			25	G	A
			42	G	A
			119	A	C
			142	G	A
Chr10
	5.5 F
		21.MMHAP26FLG3.seq	random	5.5 F to 5.5 P
			31	T	C
			42	G	A
			68	A	G
	62.3 P
		14.MMHAP32FLE2.seq	random	62.3 P
			74	A	G
			94	T	A
Chr11
	8.7 P
		MDB0504	est	8.7 P
			56	A	G
	9.8 F
		03.MMHAP34FRA9.seq	random	9.8 F
			20	C	T
			34	T	C
		32.MMHAP26FRC11.seq	random	9.8 F
			143	C	T
	10.9 F
		Results_ER_9_1_95_3_31.seq	random	10.9 F
			137	C	T
	12 F
		MHAa67b4.seq	random	10.9 F to 13.1 F
			46	C	T
	13.1 F
		21.MMHAP67FLG3.seq	random	13.1 F
			49	C	G
		M84746	est	13.1 F
			70	G	T
	30.6 F
		06.MMHAP36FRB9.seq	random	29.5 F to 31.7 F
			20	G	A
			75	A	G
			165	T	G
	31.7 F
		06.MMHAP23FLB3.seq	random	31.7 F
			160	T	C
		X80417	est	31.7 F
			48	T	C
	43.7 F
		38.MMHAP58FLE5.seq	random	43.7 F
			56	C	T
		40.MMHAP37FRF10.seq	random	43.7 F
			31	C	T
			47	C	T
	45.34105 P
		D11Mit369	genetic marker	45.34105 P
			99	T	G
	49.2 F
		Z49085	est	49.2 F
			49	T	C
			62	C	A
	53.6 P
		03.MMHAP28FRA9.seq	random	53.6 P
			112	C	T
		34.MHAa63g10.seq	random	53.6 P
			41	G	A
			102	C	T
	55.75 F
		45.MMHAP33FRG12.seq	random	53.6 F to 57.9 F
			35	G	A
	59.0 F
		X06762	est	59.0 F
			134	A	G
	62.3 F
		D11Mit123.3	genetic marker	62.3 F
			58	A	G
		D11Mit59.2	genetic marker	62.3 F
			56	C	A
	71 F
		MHAa8h1.seq	random	71.0 F to 71.0 P
			26	T	C
Chr12
	2.75 F
		10.MHAa91e10.seq	random	2.2 F to 3.3 F
			51	G	A
			85	C	T
			135	A	G
	3.3 F
		D12Mit209.2	genetic marker	3.3 F
			97	T	C
	3.3 P
		47.MMHAP44FLH5.seq	random	3.3 P
			36	T	G
			59	T	C
	9.8 F
		38.MMHAP88FRE11.seq	random	9.8 P to 9.8 F
			100	T	C
	13.65 F
		24.MMHAP34FRH9.seq	random	13.1 F to 14.2 F
			53	T	A
	16.4 F
		13.MMHAP22FRE7.seq	random	16.4 F
			52	A	G
			130	G	A
	17.5 F
		34.MHAa56g10.seq	random	17.5 F
			29	G	A
			47	T	C
	18.6 F
		10.MMHAP34FLD1.seq	random	18.6 F
			99	T	C
		36.MMHAP70FRD12.seq	random	18.6 F
			120	T	C
	23.0 F
		17.MMHAP9FRF8.seq	random	23.0 F
			36	C	T
			67	G	A
		Z11664	est	23.0 F
			102	A	G
	36.1 F
		Z46227	est	36.1 F
			140	C	T
	41.5 F
		12.MMHAP91FLD3.seq	random	41.5 F
			140	T	G
	51.4 P
		D12Mit17.1	genetic marker	51.4 P
			106	T	C
	57.35 F
		M86750	est	56.8 F to 57.9 F
			74	C	T
	60.1 P
		D12Mit41.1	genetic marker	60.1 P
			88	G	T
Chr13
	2.2 F
		22.MHAa10f10.seq	random	2.2 F
			19	T	C
			36	A	G
		MHAa87h6.seq	random	2.2 P to 2.2 F
			59	T	A
	6.6 F
		22.MMHAP67FRH7.seq	random	6.6 F to 6.6 P
			101	G	A
	7.7 F
		MHAa67f1.seq	random	7.7 F
			65	G	A
			146	G	A
	9.8 F
		13.MMHAP28FRE7.seq	random	9.8 F
			121	A	G
	24.0 F
		30.MMHAP28FLB6.seq	random	24.0 F
			38	T	G
			69	G	A
		34.MMHAP35FRD10.seq	random	24.0 F
			39	G	A
		40.MMHAP84FRF10.seq	random	24.0 F
			77	A	G
			97	T	A
		41.MMHAP83FLF5.seq	random	24.0 F
			42	C	T
	37.2 F
		11.MMHAP69FLD2.seq	random	37.2 F
			31	T	C
	39.3 P
		45.MMHAP5FRG12.seq	random	39.3 P
			51	A	T
	40.4 F
		44.MMHAP88FRG11.seq	random	40.4 F
			45	A	G
	50.3 P
		D13Mit150.2	genetic marker	50.3 P
			53	A	G
	53.6 F
		09.MMHAP94FLC3.seq	random	53.6 F
			70	G	A
Chr14
	0.0 P
		30.MMHAP88FRB12.seq	random	0.0 P
			29	T	C
	2.2 F
		MHAa7c2.seq	random	2.2 F
			90	A	G
	19.7 F
		46.MHAa90d10.seq	random	19.7 F to 19.7 P
			34	A	G
	38.3 F
		19.MHAa43d7.seq	random	38.3 F
			48	C	A
			84	T	G
	51.95 F
		41.MMHAP31FLF5.seq	random	51.4 F to 52.5 F
			69	G	A
			126	A	T
			134	T	C
	52.5 F
		06.MMHAP59FLB3.seq	random	52.5 F
			128	A	G
		MHAa70g10.seq	random	52.5 F
			117	A	G
	63.4 F
		17.MMHAP9FLF2.seq	random	63.4 F
			24	A	T
	69.9 F
		MHAa67g1.seq	random	69.9 F
			101	G	A
Chr15
	6.6 F
		02.MMHAP86FRA8.seq	random	6.6 F
			59	A	G
			146	C	T
	10.9 F
		03.MMHAP70FRA9.seq	random	10.9 F
			25	A	T
			50	A	G
			81	C	G
			98	C	T
	14.2 F
		X97817	est	14.2 F
			40	A	G
	15.3 F
		U28726	est	14.2 F to 16.4 F
			80	A	G
		U50631	est	14.2 F to 16.4 F
			111	A	G
	15.85 F
		45.MMHAP33FLG6.seq	random	15.3 P to 16.4 F
			86	T	C
	16.4 F
		44.MHAa63d8.seq	random	16.4 F
			30	A	G
		D15Mit139.2	genetic marker	16.4 F
			153	T	C
		mHAa57c12.seq	random	16.4 F to 16.4 P
			41	T	A
	17.5 F
		02.MMHAP64FRA8.seq	random	17.5 P to 17.5 F
			37	G	A
			77	G	A
			121	T	C
		45.MMHAP36FRG12.seq	random	17.5 F
			54	C	T
			84	T	A
	32.8 F
		M21734	est	32.8 F
			63	T	G
		MHAa54d6.seq	random	32.8 F
			40	G	C
			69	C	A
	35.0 F
		M64849	est	35.0 F
			99	T	C
			123	G	C
	44.25 P
		10.MMHAP30FLD1.seq	random	42.6 P to 45.9 P
			79	T	C
	59 F
		M95545	est	57.9 F to 60.1 F
			48	C	T
	61.2 P
		D15Mit97.2	genetic marker	61.2 P
			50	T	C
Chr16
	29.5 F
		U13263	est	29.5 F
			26	A	T
	33.35 F
		16.MHAa89f4.seq	random	32.8 F to 33.9 F
			43	T	C
	48.65 F
		34.MMHAP94FRD10.seq	random	45.9 F to 51.4 P
			73	A	G
	51.4 P
		MHAa29a8.seq	random	51.4 P
			62	T	C
			74	T	A
Chr17
	10.35 F
		19.MMHAP33FRG7.seq	random	9.8 F to 10.9 F
			86	G	A
		35.MMHAP28FRD11.seq	random	9.8 F to 10.9 F
			78	C	G
		44.MMHAP25FLG5.seq	random	9.8 F to 10.9 F
			54	T	C
		M55637	est	9.8 F to 10.9 F
			58	A	G
			97	C	T
	33.9 F
		D17Mit217.3	genetic marker	33.9 F
			27	T	C
			109	T	G
Chr18
	4.4 P
		25.MMHAP80FLA4.seq	random	4.4 P
			140	T	C
	9.8 F
		14.MMHAP9FRE8.seq	random	9.8 F
			24	C	T
			41	T	G
			60	G	A
			74	A	T
			85	T	C
		MHAa84h6.seq	random	9.8 F
			132	C	A
		X58995	est	9.8 F to 9.8 P
			39	T	A
			102	T	G
	9.8 P
		40.MMHAP11FRF10.seq	random	9.8 P
			101	G	T
	14.75 F
		27.MMHAP16FRA12.seq	random	14.2 F to 15.3 F
			125	G	T
	15.3 F
		12_5_2_2.seq	random	15.3 F
			134	G	C
		9_15_65lon.seq	random	15.3 F
			96	A	G
	15.85 F
		Results_ER_8_28_95_2_26.seq	random	15.3 F to 16.4 F
			82	T	C
			142	C	T
	26.2 F
		27.MMHAP68FLA6.seq	random	26.2 F
			31	G	A
			63	T	C
			65	A	T
		D18Mit100.2	genetic marker	26.2 F
			61	G	A
	31.7 F
		41.MMHAP54FLF5.seq	random	31.7 F
			90	A	G
	37.2 P
		D18Mit216.1	genetic marker	37.2 P
			23	T	C
Chr19
	13.1 F
		D19Mit16.1	genetic marker	13.1 F
			35	G	T
	17.5 F
		08.MMHAP17FRC8.seq	random	17.5 F
			104	T	C
	18.6 F
		D19Mit99.2	genetic marker	18.6 F
			86	G	A
	34.45 F
		26.MMHAP54FLA5.seq	random	35.0 F to 33.9 P
			126	C	T
	35.0 F
		MHAa67a4.seq	random	35.0 F
			37	T	C
			94	A	G
ChrX
	21.9 F
		34.MMHAP28FLD4.seq	random	21.9 F
			151	C	T
	24.0 P
		28.MMHAP28FRB10.seq	random	24.0 P
			23	C	T
	56.4206 P
		32.MMHAP94FLC5.seq	random	56.4206 P
			85	C	T

For further information contact:

Kerstin Lindblad-Toh