Output
From ArachneWiki
Arachne produces a lot of output. Here is a list of some important output files, including how they are generated, what they contain, and where they can be found. To locate the output directories by name, see Directory tree. This list does not include files in KEY, which are produced by ForDistribution.
Generated in RUN by Assemblez modules
- Raw assembly output
- assembly.bases.gz: gzipped fasta file for output contigs.
- assembly.quals.gz: gzipped qual file for output contigs.
- assembly.links
- assembly.reads
- assembly.unplaced
- Text reporting
- assemblez.log: Direct output from Assemblez. Note that if more modules are run after Assemblez, their output will be appended here.
- assembly.ps: a PostScript file generated by FinishNewReport.
Generated in RUN/work
- reads.fastb
- reads.ids
- reads.pairto -- human-readable
- nobbits.gz
- nobbits_refined.gz
