Arachne Main Page

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This is the online home of Arachne, the Whole Genome Shotgun Assembler developed at the Broad Institute.

Quick Links

Arachne Reference


  • Nightly Build: The current state of Arachne - updated within the last 24 hours.
  • Stable Build: The latest stable, trustworthy version of Arachne.
  • Sample Projects: Ready-made examples of Arachne input.

Public tools


External links


Batzoglou S, Jaffe DB, Stanley K, Butler J, Gnerre S, Mauceli E, Berger B, Mesirov JP, Lander ES. January, 2002. ARACHNE: a whole-genome shotgun assembler. Genome Research 12: 177 - 189.

Jaffe DB, Butler J, Gnerre S, Mauceli E, Lindblad-Toh K, Mesirov JP, Zody MC, Lander ES. January, 2003. Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Research 13: 91 - 96.

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