Arachne Main Page

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[[Arachne]] is the [[w:Shotgun sequencing|Whole Genome Shotgun]] Assembler developed at the [[w:Broad Institute|Broad Institute]].
[[Arachne]] is the [[w:Shotgun sequencing|Whole Genome Shotgun]] Assembler developed at the [[w:Broad Institute|Broad Institute]].
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Under continuous development since 2000, the Arachne software package has evolved from the classic "overlap-layout-consensus" paradigm into a vast collection of different tools and modules, some to modify and manipulate assemblies, others to analyze and gather statistics or vizualize genomes. The current version of Arachne can be downloaded as source code.
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[[ArachneWiki:About|The ArachneWiki]] is Arachne's online home. To participate in this wiki, please send mail to [mailto:arachne@broad.mit.edu arachne@broad.mit.edu] to ask for an account.
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To participate in this wiki, please send mail to [mailto:arachne@broad.mit.edu arachne@broad.mit.edu] to ask for an account.
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== Quick Links ==
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== Downloads ==
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=== Downloads ===
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* [[Installation]]: how to download, install, and compile Arachne.
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* [[Nightly Build]]: The current state of Arachne - updated within the last 24 hours.
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* [[Stable Build]]: The latest stable, trustworthy version of Arachne.
* [[Sample Project]]s: ready-made examples of Arachne input.
* [[Sample Project]]s: ready-made examples of Arachne input.
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== Using Arachne ==
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=== Using Arachne ===
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* [[Input]]: how to set up input files.
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* [[Setup]]: how to download, install, and compile Arachne.
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* [[Input]]
* [[Running Arachne]]: from traces to the draft genome.
* [[Running Arachne]]: from traces to the draft genome.
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* [[Output]]: how the output looks like, and how to translate it in a human readable format.
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* [[Output]]
* [[Analysis]]: how to examine your assembly.
* [[Analysis]]: how to examine your assembly.
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* [[Restricted:Algorithms|Algorithms]]: you have your first assembly, now you want to make it better. Here, you might find out how.
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* [[Restricted:Algorithms|Algorithms]]: For improving assemblies.
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== Miscellaneous ==
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=== Miscellaneous ===
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* [[ArachneWiki:About|About this resource]]: what's in here, why, and how to find it.
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* [[ArachneWiki:About|About ArachneWiki]]
* Arachne's [[lore]]
* Arachne's [[lore]]

Revision as of 22:22, 26 December 2007

frame:Spooky Spider


Arachne is the Whole Genome Shotgun Assembler developed at the Broad Institute.

The ArachneWiki is Arachne's online home. To participate in this wiki, please send mail to arachne@broad.mit.edu to ask for an account.

Contents

Quick Links

Downloads

  • Nightly Build: The current state of Arachne - updated within the last 24 hours.
  • Stable Build: The latest stable, trustworthy version of Arachne.
  • Sample Projects: ready-made examples of Arachne input.

Using Arachne

Miscellaneous


External links

Personal tools