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ARACHNE BIN DIRARACHNE DIR
Ace
Algorithms
Alignment
Allpaths
ArachneArachne Main Page
Arachne binary formatArachne code package
AssemblatorAssembleAssemblez
AssemblyAssembly.links
Assembly.psAssembly.readsAssembly.unplaced
Assembly process
AssistMain
Assisted assemblyBackupMergedContigsBase
Basevector
BasicAssemblyStatsBasicStatsBatrachochytrium dendrobatidis
Binary
Blast trimming
Build FAQ
Candida albicans
Chimerism
Chimpanzee
ChromosomeCleanAlignments
CloseGaps
ComputeLibStatsComputeLibraryClusters
Consensus
ContigContigSanitizer
Contigs.fasta
ConvertEcfBuild35ToLookAlignsCopySubdir
CoverageCreateAceFileCurrent requirements
DATA
Directory treeDisplayMappingDisplaySupercontig
DogDolphin
E. coli
Elephant
Error correctionExact trimming
FastaFastbFetchAndTrim
Feudal
FindXmlFeatures
Finding telomeresFixLocationsForDistribution
GC-content
GDBGap
GenomeGenome.size
Guinea pig
HQDAnnotatorHaemophilus influenzae
HomopolymerHorse
HybridAssemble
Hybrid assemblyImproving Assemblies
IndelIndependent modules
Index listInput
K
KEY
Kangaroo rat
Kmer
Legacy requirements
LibraryLoader
Lodderomyces elongisporusLookAlign
Looking at Assemblies
Lookup tableLore
Main Page
MakeHumanlocsMakeLookupTableManfred G. Grabherr
Mergedcontigs.fastb
Mergedcontigs.qualb
Monodelphis domesticaMouse
N50NO HEADER
Neurospora crassa
OpgenMap2ArachneOptiDetailedAligns
Optical mapOrientation
Output
PRE
PartitionInputPhytophthora infestans
Plasmodium falciparum
Polymorphism
PolymorphismEstimatorPostScript
Pre-processing
PutMarkersOnAssembly
QualQualaQualb
Quality score
Qualvector
QueryLookupTable
RUNRabbit
Read
Read pair
Read trimming
Reads.idsReads.is repetitiveReads.to exclude
ReadsToAlignsReads config.xmlRebuilder
RecycleGarbage
RegapLiteReindexSupersRemoveContigs
Repeat
Requirements
Rhizopus oryzaeRunMarkupRunTime
Running Arachne
SUBDIRSWAP454 Main Page
Sante Gnerre
Segmental duplication
Sequence
Sequencing
Sequencing error
SetupSetupHitsSetupMap
SffToArachne
Single Nucleotide Polymorphism
SquirrelStagonospora nodorum
SuperDotPlotSupercontig
System
TagRepeatReadsTagRepeats
TelomereTilapia
TilingTraceinfoTree shrew
VAAL Main Page
VAAL ManualVecVector trimming
VerifyAssemblyIntegrity
WGA Team
Whole Genome Shotgun AssemblyWill Brockman
Work
XML ancillary files
Views
Personal tools