FixLocations
From ArachneWiki
| FixLocations | |
|---|---|
| Function | Cleanup |
| Phase | Assembly |
| Standard CLAs | PRE, DATA, RUN, SUBDIR, GDB, NO_HEADER |
| Special CLAs | ONE_SUPER, ID, ONE_CONTIG, CONTIG_ID, MANY_CONTIGS, LOAD_ALL, MODIFY, HISTOGRAM, USE_FASTB, VERBOSE, popUnalignableReads, useAdjustedTrims, quickCheck, UnmergeLocsForAssemblez |
| Source location | ARACHNE_DIR/assemble |
FixLocations is a module that fine-tunes ReadLocation objects by recalculating alignments between reads and contigs. When run with MODIFY=True, it creates the file mergedcontigs.pma. Any module that relies heavily on alignments, such as CreateAceFile, should not be run without first running FixLocations.
