| Standard CLAs
|| PRE, DATA, RUN, SUBDIR, GDB, NO_HEADER
| Special CLAs
|| LIBSTATS_DIR, USE_UNTRIMMED_LENGTHS, GENERATE_LENGTHS_FILES, USE_PLATES, UPDATE_PAIRTO_FILE, min_inserts_observed_in_plate, min_percent_plates_observed, min_percent_inserts_observed, min_score_for_cluster, min_plates_in_cluster
| Source location
- For the post-processing module, see ComputeLibraryClusters.
ComputeLibStats is a module that re-estimates insert separations and deviations based on read placements in an assembly. This may be necessary because the insert sizes given in input libraries are given with large uncertainties and may be incorrect. After placing the reads, the insert sizes can be computed to greater accuracy.
ComputeLibStats is run by Assemblez if the flag COMPUTE_LIB_STATS is set to True. It writes most of its output to the lib_stats directory, which is used by ComputeLibraryClusters.