BackupMergedContigs

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BackupMergedContigs
Function Utility
Phase Output
Standard CLAs PRE, DATA, RUN, GDB, NO_HEADER
Special CLAs BACKUP_MC, OVERWRITE_OK
Source location ARACHNE_DIR/assemble

BackupMergedContigs is a module that copies selected files from RUN into a SUBDIR. BackupMergedContigs derives its name from one of its uses, which is to allow you to save a backup SUBDIR before running MergeSupercontigs. If MergeSupercontigs does not produce a good result for you, you can ignore the result and use the saved SUBDIR to run it again.

The backup SUBDIR name is specified by the command-line argument BACKUP_MC. The following files are copied into SUBDIR, if they exist:


* - if this file cannot be found, attempts to copy the .gz form instead.

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