Assembly.links

From ArachneWiki

The output file assembly.links describes the connections between contigs and supercontigs in a draft assembly. It has a tab-delimited format with the following fields, one row per contig, ordered by supercontig ID and the ordinal number of the contig in the supercontig:

     Type 	Meaning
     Integer 	ID of the supercontig containing this contig
     Integer 	Length of the supercontig containing this contig (including estimated gap sizes)
     Integer 	Number of contigs in the supercontig containing this contig
     Integer 	Ordinal number of this contig in the supercontig
     Integer 	ID of this contig
     Integer 	Length of this contig
     Integer 	Estimated length of gap before this contig (zero if first contig in supercontig)
     Integer 	Estimated length of gap after this contig (zero if last contig in supercontig)