The pipeline section of the website covers the technology used to move the samples from biological specimen to knowledge. Starting from the physical technology platforms used to process the samples and generate the raw data (i.e., arrays or sequencing), to the processing steps used to generate knowledge from this primary information, and finally the analytical tools used across several samples to deliver the finalized polished knowledge for presentation and viewing.
Important LinksTumorscape TCGA: This portal is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types of TCGA. Gene-level analysis, tumor-type analysis, and data all available for download and are IGV-viewable.
Meyerson Lab Website: Lab website of Matthew Meyerson, MD, PhD with combined personnel from the Dana-Farber Cancer Institute and the Broad Institute.
Stacey Gabriel: Broad Institute people profile.