Download

TCGA Open Access

TCGA Bulk Download

TCGA Data Portal

dbGAP

Short Read Archive (SRA)

Cancer Specific Batch Downloads

Cancer CBS Segmentation Birdseed Call DCC Batch Download
BLCA QC QC
BRCA QC QC
CESC QC QC
COAD QC QC
GBM QC QC
HNSC QC QC
KIRC QC QC
KIRP QC QC
LGG QC QC
LIHC QC QC
LUAD QC QC
LUSC QC QC
OV QC QC
PAAD QC QC
PRAD QC QC
READ QC QC
STAD QC QC
THCA QC QC
UCEC QC QC

Aggregate Post-production QC Plots – Segmentation

segment_type_batch

Number of Segments for Each TCGA Cancer Type by Batch

Aggregate Post-production QC Plots – Birdseed Call Rate

bird_type_batch

BIRDSEED_CALL_RATE for Each TCGA Cancer Type by Batch

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