The Broad Institute has created a separate cancer data portal for viewing copy number data generated at our GCC. The direct link is http://www.broadinstitute.org/tcga/.
Important LinksTumorscape TCGA: This portal is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types of TCGA. Gene-level analysis, tumor-type analysis, and data all available for download and are IGV-viewable.
Meyerson Lab Website: Lab website of Matthew Meyerson, MD, PhD with combined personnel from the Dana-Farber Cancer Institute and the Broad Institute.
Stacey Gabriel: Broad Institute people profile.