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Tumorscape TCGA: This portal is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types of TCGA. Gene-level analysis, tumor-type analysis, and data all available for download and are IGV-viewable.
Meyerson Lab Website: Lab website of Matthew Meyerson, MD, PhD with combined personnel from the Dana-Farber Cancer Institute and the Broad Institute.
Stacey Gabriel: Broad Institute people profile.
Welcome to the Broad Institute of Harvard and MIT's Genome Characterization Center (GCC) website. As a GCC we specialize in sample processing and data generation for high resolution copy number data for TCGA cancer samples, all of which are readily available on this website.
Pipeline Overview
Click on a panel for more detail.
Please browse through the site and find the following types of information:
- Methods: platforms used as part of being a GCC as well as the software analysis pipelines used.
- Data/Analysis: pipeline QC plots, individual sample purity/ploidy, batch SNP 6.0 array data download, GISTIC2 analysis, and more.
- Results: all the publications for which the Broad GCC was involved including all supporting publications.
- About: information about the Broad-GCC, TCGA, Cancer Genetics Program, and Broad Institute itself.
The Broad Institute Genome Characterization Center