News / Events
Nov 12, 2013: The Gene Set Enrichment Analysis (GSEA) is not currently able to run due to server issues. Engineers are working on the problem.
Sep 30, 2013: The CCLE can now upload data directly to GenomeSpace. To learn more, see the GenomeSpace blog
Sep 18, 2013: The portal will be unavailable from Thursday October 17 through Sunday October 20th for server maintenance.
Aug 6, 2013: The problems with the GeneNeighbors and Differential Expression (CMS) analyses have been corrected. All systems are functioning normally once again.
Aug 5, 2013: Due to a database issue, the GeneNeighbors and Differential Expression (CMS) analyses are not currently working. We have engineers trying to resolve the problem and hope to have this fixed shortly.
May 20, 2013: The server problem has been resolved. Differential Expression, Gene Set Enrichment Analysis (GSEA) and sample browsing are working once again.
May 17, 2013: There is currently a problem with accessing cell line annotations from the CCLE database. As a result browsing cell line annotations, GSEA and differential expression analysis are not currently working. We are working to resolve the problem as quickly as possible.
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Tutorials / Manuals
Tutorials, analysis descriptions and other documentation is available at:
HELP > DOCUMENTS
Frequently Altered Genes
clouds summarizing genes frequently altered in the datasets of this
portal are available in the
Mutation tag cloud
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity, Barretina Caponigro Stransky et al., Nature 483, 603-307, 2012
Project Achilles is a systematic effort aimed at identifying and cataloging genetic vulnerabilities across hundreds of genomically characterized cancer cell lines.
The Cancer Therapeutic Response Portal provides profiles of the impact of a small-molecule collection of 185 compounds on a panel of 242 cancer cell lines
The Genotype-Tissue Expression project (GTEx) aims to create a comprehensive public atlas of gene expression and regulation across multiple human tissues