Software Acknowledgements

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GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.

Jide Software

Java/Swing components

jidesoft.com

The Java 2 Platform

image:duke.gif

Language that the GSEA desktop application is written in

java.sun.com 

The R programming language

image:Rlogo.jpg

Language that the GSEAP-P-R is written in

www.r-project.org

 Intellij IDEA

image:idea.png

An awesome integrated development environment for Java

www.intellij.com/idea 

JGoodies

Forms layout and java look and feel

www.jgoodies.com

foxtrot

Java event handling mechanism for GUI's.

 foxtrot.sourceforge.net 

dom4j

XML Parser

www.dom4j.org 

itext

image:itext.gif

Java PDF library

www.lowagie.com/iText

Jakarta POI

(especially HSSF)

image: poi-logo.png

Java excel reporting

jakarta.apache.org/poi 

JFreeChart

image: jfreechart.png

Graphing library for Java

www.object-refinery.com/jfreechart 

JUnit

image: junit.gif

Unit testing API

www.junit.org 

log4j

image:log4j.jpg

Logging toolkit for Java

jakarta.apache.org/log4j 

Oro

Regular expressions library in Java

jakarta.apache.org/oro 

Trove

High performance collections library from GNU

trove4j.sourceforge.net 

ECS

Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)

jakarta.apache.org

Xenu link sleuth

Website broken link checker

home.snafu.de/tilman/xenulink

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