Difference between revisions of "Release Notes"

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<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | Documentation | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a> <br />
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<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |  
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<br />
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<a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> |  
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<h3><font color="#3366ff">GSEA Web Site Release Notes</font></h3>
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<a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> |  
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<a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> |
 +
<a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>
 +
<br>
 +
<h3><font color="#3366ff">Web Site Release Notes</font></h3>
 
<table height="78" width="639" cellspacing="1" cellpadding="1" border="0" align="" summary="">
 
<table height="78" width="639" cellspacing="1" cellpadding="1" border="0" align="" summary="">
 
     <tbody>
 
     <tbody>
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             <td><strong>Description</strong></td>
 
             <td><strong>Description</strong></td>
 
             <td><strong>Release Notes</strong></td>
 
             <td><strong>Release Notes</strong></td>
 +
        </tr>
 +
          <tr>
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            <td>Mar 2015</td>
 +
            <td>5.00*</td>
 +
            <td>Upgrades to support v5.0 MSigDB.</td>
 +
            <td></td>
 +
        </tr>
 +
        <tr>
 +
            <td>Jun 2014</td>
 +
            <td>4.05</td>
 +
            <td>Several minor updates</td>
 +
            <td></td>
 +
        </tr>
 +
        <tr>
 +
            <td>Apr 2013</td>
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            <td>3.87</td>
 +
            <td>Several bug fixes and new functionality.</td>
 +
            <td>[[Web site v3.87 Release Notes|wiki]]</td>
 +
        </tr>
 +
      <tr>
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            <td>Oct 2012</td>
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            <td>3.84</td>
 +
            <td>Several updates and new functionality.</td>
 +
            <td></td>
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>
 
             <td>Jan 2011</td>
 
             <td>Jan 2011</td>
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             <td>3.5*</td>
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             <td>3.5</td>
 
             <td>Several bug fixes and some new functionality.</td>
 
             <td>Several bug fixes and some new functionality.</td>
 
             <td>[[Web site v3.4 Release Notes|wiki]]<br />
 
             <td>[[Web site v3.4 Release Notes|wiki]]<br />
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     </tbody>
 
     </tbody>
 
</table>
 
</table>
 +
 
<h3><font color="#3366ff">GSEA Software Release Notes</font></h3>
 
<h3><font color="#3366ff">GSEA Software Release Notes</font></h3>
 
<table height="78" width="639" cellspacing="1" cellpadding="1" border="0" align="" summary="">
 
<table height="78" width="639" cellspacing="1" cellpadding="1" border="0" align="" summary="">
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             <td><strong>Release Notes</strong></td>
 
             <td><strong>Release Notes</strong></td>
 
         </tr>
 
         </tr>
 +
        <tr>
 +
            <td>Mar 2015</td>
 +
            <td>2.2.0*</td>
 +
            <td>Upgrades to support v5.0 MSigDB</td>
 +
            <td></td>
 +
        </tr>
 +
        <tr>
 +
            <td>Jun 2014</td>
 +
            <td>2.1.0</td>
 +
            <td>Added Enrichment Map visualization of GSEA results</td>
 +
            <td>[[GSEA_v2.1.0._Release_Notes|wiki]]</td>
 +
        </tr>
 +
        <tr>
 +
            <td>Jan 2014</td>
 +
            <td>2.0.14</td>
 +
            <td>Upgrades and bug fixes</td>
 +
            <td>[[GSEA_v2.0.14._Release_Notes|wiki]]</td>
 +
        </tr>
 +
          <tr>
 +
            <td>Apr 2013</td>
 +
            <td>2.0.13</td>
 +
            <td>Upgrades and bug fixes</td>
 +
            <td>[[GSEA_v2.0.13._Release_Notes|wiki]]</td>
 +
        </tr>
 +
      <tr>
 +
            <td>Apr 2013</td>
 +
            <td>2.0.12</td>
 +
            <td>Upgrades and bug fixes</td>
 +
            <td>[[GSEA_v2.0.12._Release_Notes|wiki]]</td>
 +
        </tr>
 +
        <tr>
 +
            <td>Jan 2013</td>
 +
            <td>2.0.10</td>
 +
            <td>Fixed recent FTP access issues </td>
 +
            <td>[[GSEA_v2.0.10._Release_Notes|wiki]]</td>
 +
      </tr>
 +
        <tr>
 +
            <td>Dec 2012</td>
 +
            <td>2.0.9</td>
 +
            <td>Upgrades and bug fixes </td>
 +
            <td>[[GSEA_v2.09._Release_Notes|wiki]]</td>
 +
      </tr>
 +
      <tr>
 +
            <td>Oct 2012</td>
 +
            <td>2.0.8</td>
 +
            <td>Upgrades and bug fixes </td>
 +
            <td>[[GSEA_v2.08._Release_Notes|wiki]]</td>
 +
      </tr>
 
         <tr>
 
         <tr>
 
             <td>Sept 2010</td>
 
             <td>Sept 2010</td>
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             <td>2.0.7*</td>
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             <td>2.0.7</td>
 
             <td>Added support for loading other versions of MSigDB into the browser.</td>
 
             <td>Added support for loading other versions of MSigDB into the browser.</td>
 
             <td>[[GSEA  v2.0.7 Release Notes|wiki]]</td>
 
             <td>[[GSEA  v2.0.7 Release Notes|wiki]]</td>
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             <td>1.0</td>
 
             <td>1.0</td>
 
             <td>Initial release</td>
 
             <td>Initial release</td>
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             <td>Not available</td>
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             <td></td>
 
         </tr>
 
         </tr>
 
     </tbody>
 
     </tbody>
 
</table>
 
</table>
 +
 
<h3><font color="#3366ff">MSigDB Release Notes</font></h3>
 
<h3><font color="#3366ff">MSigDB Release Notes</font></h3>
 
<table height="83" width="637" cellspacing="1" cellpadding="1" border="0" align="" summary="">
 
<table height="83" width="637" cellspacing="1" cellpadding="1" border="0" align="" summary="">
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             <td><strong>Release Notes</strong></td>
 
             <td><strong>Release Notes</strong></td>
 
         </tr>
 
         </tr>
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         <tr valign="top">
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        <tr valign="top">
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             <td>September 2010</td>
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            <td>Mar 2015</td>
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             <td>&nbsp;3.0*</td>
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            <td>&nbsp;5.0*</td>
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             <td>C1 (-60); C2 (+1,380); C3 (-1); C4 (-2); C5 (+0)</td>
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            <td>H (+50); C2 (+3)<br>
 +
                    [[Mapping_between_v5.0_and_v4.0_gene_sets|Mapping between v5.0 and v4.0 gene sets]]</td>
 +
            <td>[[MSigDB_v5.0_Release_Notes|wiki]]</td>
 +
        </tr>
 +
        <tr valign="top">
 +
            <td>May 2013</td>
 +
            <td>&nbsp;4.0</td>
 +
            <td>C2 (-128); C7 (+ 1,910)</td>
 +
            <td>[[MSigDB_v4.0_Release_Notes|wiki]]</td>
 +
         </tr>
 +
      <tr valign="top">
 +
             <td>Oct 2012</td>
 +
            <td>&nbsp;3.1</td>
 +
            <td>C2 (+1,578); C4 (-23); C6 (+189)<br>
 +
                    [[Mapping_between_v3.1_and_v3.0_gene_sets|Mapping between v3.0 and v3.1 gene sets]]</td>
 +
            <td>[[MSigDB_v3.1_Release_Notes|wiki]]</td>
 +
        </tr>
 +
        <tr valign="top">
 +
            <td>Sept 2010</td>
 +
             <td>&nbsp;3.0</td>
 +
             <td>C1 (-60); C2 (+1,380); C3 (-1); C4 (-2) <br>
 +
                    [[Msigdb_mapping_v2.5_to_v3|Mapping between v2.5 and v3.0 gene sets]]</td>
 
             <td>[[MSigDB_v3.0_Release_Notes|wiki]]</td>
 
             <td>[[MSigDB_v3.0_Release_Notes|wiki]]</td>
 
         </tr>
 
         </tr>
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             <td>April 2008</td>
 
             <td>April 2008</td>
 
             <td>&nbsp;2.5</td>
 
             <td>&nbsp;2.5</td>
−
             <td>C1 (+0); C2  (+205); C3 (+0); C4 (+456); C5 (+1454) <br />
+
             <td> C2  (+205); C4 (+456); C5 (+1454) <br />
 
             </td>
 
             </td>
 
             <td>[[MSigDB_v2.5_Release_Notes|wiki]]</td>
 
             <td>[[MSigDB_v2.5_Release_Notes|wiki]]</td>
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             <td>Jan 2007</td>
 
             <td>Jan 2007</td>
 
             <td>&nbsp;2.0</td>
 
             <td>&nbsp;2.0</td>
−
             <td>C1 (updated); C2 (+269); C3 (+214); C4 (+0)            <br />
+
             <td>C1 (updated); C2 (+269); C3 (+214)            <br />
 
             [[Msigdb_mapping_v1_to_v2|Mapping between v1 and v2 gene sets]]</td>
 
             [[Msigdb_mapping_v1_to_v2|Mapping between v1 and v2 gene sets]]</td>
 
             <td>[[Msigdb_may_2006_release_notes|wiki]]</td>
 
             <td>[[Msigdb_may_2006_release_notes|wiki]]</td>
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             <td>Nov 2005</td>
 
             <td>Nov 2005</td>
 
             <td>&nbsp;1.1</td>
 
             <td>&nbsp;1.1</td>
−
             <td>C1 (updated); C2 (+350); C3 (+566); C4 (+0)<br />
+
             <td>C1 (updated); C2 (+350); C3 (+566); C4<br />
 
             </td>
 
             </td>
 
             <td>[http://www.broadinstitute.org/gsea/doc/msigdb_nov_2005_release_notes.pdf pdf]</td>
 
             <td>[http://www.broadinstitute.org/gsea/doc/msigdb_nov_2005_release_notes.pdf pdf]</td>
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</table>
 
</table>
 
<br />
 
<br />
 +
<hr>
 
* Current release <br />
 
* Current release <br />
−
<br />
 
−
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <br />
 
−
 
−
<h3><font><font color="#3366ff">MSigDB Statistics<br /></font></font></h3>
 
−
 
−
[[image:Msigdb_growth_0910.png|600px]]<br><br>
 
−
 
−
<p>Frequency histograms of gene set sizes for each collection in MSigDB 3.0.</p>
 
−
<br>
 
−
[[image:Msigdb c1 stats mar11 2011.png|600px]]<br>
 
−
[[image:Msigdb c2 stats mar11 2011.png|600px]]<br>
 
−
[[image:Msigdb c3 stats mar11 2011.png|600px]]<br>
 
−
[[image:Msigdb c4 stats mar11 2011.png|600px]]<br>
 

Revision as of 20:18, 20 March 2015

<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>

Web Site Release Notes

<tbody> </tbody>
Date Release Description Release Notes
Mar 2015 5.00* Upgrades to support v5.0 MSigDB.
Jun 2014 4.05 Several minor updates
Apr 2013 3.87 Several bug fixes and new functionality. wiki
Oct 2012 3.84 Several updates and new functionality.
Jan 2011 3.5 Several bug fixes and some new functionality. wiki

GSEA Software Release Notes

<tbody> </tbody>
Date Release Description Release Notes
Mar 2015 2.2.0* Upgrades to support v5.0 MSigDB
Jun 2014 2.1.0 Added Enrichment Map visualization of GSEA results wiki
Jan 2014 2.0.14 Upgrades and bug fixes wiki
Apr 2013 2.0.13 Upgrades and bug fixes wiki
Apr 2013 2.0.12 Upgrades and bug fixes wiki
Jan 2013 2.0.10 Fixed recent FTP access issues wiki
Dec 2012 2.0.9 Upgrades and bug fixes wiki
Oct 2012 2.0.8 Upgrades and bug fixes wiki
Sept 2010 2.0.7 Added support for loading other versions of MSigDB into the browser. wiki
Feb 2010 2.0.6 Fixed recent FTP access issues wiki
Dec 2009 2.0.5 Update GSEA to run under Java 1.6 wiki
Mar 2009 2.0.4 Increased the processing speed of the GSEA algorithm
 wiki
Feb 2009 2.0.2 Added support for password-protected ftp site wiki
Feb 2007 2.0.1 Fixed error running leading edge analysis wiki
Jan 2007 2.0 Major release with significant enhancements html
Mar 2005 1.0 Initial release

MSigDB Release Notes

<tbody> </tbody>
Date Release Description Release Notes
Mar 2015  5.0* H (+50); C2 (+3)
Mapping between v5.0 and v4.0 gene sets		 wiki
May 2013  4.0 C2 (-128); C7 (+ 1,910) wiki
Oct 2012  3.1 C2 (+1,578); C4 (-23); C6 (+189)
Mapping between v3.0 and v3.1 gene sets		 wiki
Sept 2010  3.0 C1 (-60); C2 (+1,380); C3 (-1); C4 (-2)
Mapping between v2.5 and v3.0 gene sets		 wiki
April 2008  2.5 C2 (+205); C4 (+456); C5 (+1454)
wiki
Feb 2007  2.1 Minor updates to MSigDB v2.0 annotations
Jan 2007  2.0 C1 (updated); C2 (+269); C3 (+214)
Mapping between v1 and v2 gene sets		 wiki
Nov 2005  1.1 C1 (updated); C2 (+350); C3 (+566); C4
 pdf
March 2005  1.0 Initial release
pdf


  • Current release
Retrieved from "https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Release_Notes&oldid=3892"