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The GSEA software and the Molecular Signatures Database (MSigDB) are freely available to individuals in both academia and industry for internal research purposes. We request that every unique user register at our web site, so that we could report general usage statistics to our funding agencies.
Third party code: GSEA Java software would not exist without several third party API libraries. If you are a Java coder, you likely already know how jar files work. Please refer to their respective websites for exact licensing terms. Our special thanks to Jide Software and Db4o for free licenses. You cannot use either library (even if your application is free/open source) without first getting your own download and unique keys from Jide/Db4o).
Acknowledgements: The Molecular Signature Database (MSigDB) is a collection of gene sets maintained by the GSEA team. The team welcomes and appreciates contributions to this shared resource and encourages users to submit their gene sets to firstname.lastname@example.org. Our thanks to the many contributors. A full list can be found in MSigDB Acknowledgements.
MASSACHUSETTS INSTITUTE OF TECHNOLOGY
SINGLE USER LICENSE AGREEMENT FOR INTERNAL RESEARCH PURPOSES ONLY
This Agreement is made between Massachusetts Institute of Technology with a principal address at 77 Massachusetts Avenue, Cambridge, MA 02139 (“MIT”) and the subscriber above ("LICENSEE"), and is effective at the date the downloading is completed and proper registration/licensee subscriber information submitted ("EFFECTIVE DATE").
WHEREAS, LICENSEE desires to license the PROGRAM and/or DATABASE, as defined hereinafter, MIT wishes to have this PROGRAM and DATABASE utilized in the public interest, subject only to the royalty-free, nonexclusive, nontransferable license rights of the United States Government pursuant to 48 CFR 52.227-14, and
WHEREAS, LICENSEE desires to license the PROGRAM and/or DATABASE and MIT desires to grant a license on the following terms and conditions.
NOW, THEREFORE, in consideration of the promises and covenants made herein, the parties hereto agree as follows:
1.1 “BUG FIX(ES)” shall mean LICENSEE-created code that repairs a MIT identified function of the PROGRAM.
1.2 "PROGRAM" shall mean the executable and source code known as "Gene Set Enrichment Analysis (GSEA)" and related documentation, if any, as they exist on the EFFECTIVE DATE and as can be downloaded from HYPERLINK http://www.broadinstitute.org/gsea/ on the EFFECTIVE DATE.
1.3 "DATABASE" shall mean the database of gene sets known as "Molecular Signatures Database (MSigDB)" and related documentation, if any, as it exists on the EFFECTIVE DATE and as can be downloaded from HYPERLINK http://www.broadinstitute.org/gsea/msigdb/ on the EFFECTIVE DATE.
2.1 Grant. Subject to the terms of this Agreement, MIT hereby grants to LICENSEE, solely for a single user and for internal research purposes, a non-exclusive, non-transferable license to: (a) install, execute and display the PROGRAM, only for the single user; (b) create BUG FIXES; and (c) modify the PROGRAM only for the purpose of making the PROGRAM compatible with pre-existing LICENSEE networks, platforms and applications. Further subject to the terms of this Agreement, MIT also grants to LICENSEE, solely for a single user and for internal research purposes, a non-exclusive, non-transferable license to copy, display, and use the DATABASE.
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As consideration for the licenses granted in this Agreement, LICENSEE agrees to provide accurate registration information prior to using the PROGRAM or the DATABASE and a written evaluation of the PROGRAM and the DATABASE, including a description of its functionality or problems and areas for further improvement in the PROGRAM or the DATABASE. LICENSEE hereby automatically grants to MIT a non-exclusive, royalty-free, irrevocable worldwide license to any BUG FIXES or modifications to the PROGRAM with unlimited rights to sublicense and/or distribute. Such modifications and BUG FIXES shall be provided to MIT promptly upon their creation.
4. OWNERSHIP OF INTELLECTUAL PROPERTY
LICENSEE acknowledges that title to the PROGRAM and the DATABASE shall remain with MIT. To the extent the PROGRAM or the DATABASE is marked with a MIT copyright notice, or notice of attribution to contributors, LICENSEE shall retain such notice on all copies, and on modifications and BUG FIXES where applicable. Should LICENSEE incorporate any data from the DATABASE into any software or database, LICENSEE agrees to retain, to the extent the DATABASE is marked with a MIT copyright notice or notice of attribution to contributors, such notice. LICENSEE shall be entitled to establish all proprietary rights for itself in the modifications or BUG FIXES created pursuant to Section 2.1, whether in the nature of trade secrets or copyrights, provided that all such rights are subject to MIT's copyright and that any copyright registration by LICENSEE gives full attribution to MIT's copyright.
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Articles 1, 5, 6 and Sections 2.2, 2.3, 8.2, 8.4 and 8.5.
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