GSEA v2.0.2 Release Notes
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Release 2.0.2 supports password protection of the GSEA ftp site. This entails no user-visible change to the GSEA application.
All chip annotation and MSigDB gene set files remain freely available from the Downloads page of the GSEA web site.
Note: User-created scripts that access files from the GSEA ftp site (for example, batch jobs that execute the GSEA command line) will now prompt the user to enter the password for the ftp site. To avoid the prompt, download the required files from the Downloads page of the GSEA web site and have the scripts reference the downloaded files. Alternatively, contact the GSEA team for the ftp site password.