GenePattern AuthenticationFilter org.genepattern.server.webapp.AuthenticationFilter ConnectionFilter org.genepattern.server.webapp.ConnectionFilter AuthorizationFilter org.genepattern.server.webapp.AuthorizationFilter org.genepattern.AuthorizationManagerFactory org.genepattern.server.util.AuthorizationManagerFactoryImpl genepattern.properties ../resources ConnectionFilter /* AuthenticationFilter *.jsp AuthorizationFilter /services/* AuthorizationFilter *.jsp GenePatternStartupServlet org.genepattern.server.webapp.StartupServlet javax.xml.parsers.DocumentBuilderFactory org.apache.xerces.jaxp.DocumentBuilderFactoryImpl java.io.tmpdir ./temp javax.xml.parsers.SAXParserFactory org.apache.xerces.jaxp.SAXParserFactoryImpl omnigene.conf ../resources genepattern.properties ../resources log4j.configuration webapps/gp/WEB-INF/classes/log4j.properties 30 AxisServlet Apache-Axis Servlet org.apache.axis.transport.http.AxisServlet log4j.configuration webapps/gp/WEB-INF/classes/log4j.properties 20 AxisServlet /servlet/AxisServlet AxisServlet *.jws AxisServlet /services/* index.jsp