GenePattern Modules

Modules in the repository can be installed on a local GenePattern server. Most of these modules are also installed on the public GenePattern server.

View by Category:

NameTypeAvailability
BlastTrainTest
Sequence similarity prediction using BLAST
Pdf  Version: 0.4
Prediction * Public Server Only
BlastXValidation
Sequence similarity cross-validation prediction using BLAST
Pdf  Version: 0.5
Prediction * Public Server Only
ModEcocTrainTest
Modified error correcting output code prediction
Pdf  Version: 0.5
Prediction * Public Server Only
ModEcocXValidation
Modified error correcting output code cross-validation prediction
Pdf  Version: 0.3
Prediction * Public Server Only
NearestTemplatePrediction
Nearest neighbor prediction based on a list of marker genes.
Pdf  Version: 3
Prediction * Public Server Only
CART
Classification and Regression Tree
Pdf  Version: 2
Prediction Module Repository
CARTXValidation
Classification and Regression Tree X-Validation
Pdf  Version: 2
Prediction Module Repository
KNN
K-nearest neighbors classification
Pdf  Version: 4
Prediction Module Repository
KNNXValidation
KNN classification with Leave-One-Out Cross-Validation
Pdf  Version: 6
Prediction Module Repository
NearestTemplatePrediction
Nearest neighbor prediction based on a list of marker genes
Pdf  Version: 1
Prediction Module Repository
PNN
Probabilistic Neural Network (PNN)
Pdf  Version: 1
Prediction Module Repository
PNNXValidationOptimization
PNN Leave-One-Out Cross-Validation Optimization
Pdf  Version: 2
Prediction Module Repository
SVM
Classify samples using SVM
Pdf  Version: 4
Prediction Module Repository
WeightedVoting
Weighted Voting classification
Pdf  Version: 3
Prediction Module Repository
WeightedVotingXValidation
Weighted Voting classification with Leave-One-Out Cross-Validation
Pdf  Version: 3
Prediction Module Repository