GenePattern Modules

Modules in the repository can be installed on a local GenePattern server. Most of these modules are also installed on the public GenePattern server.

View by Category:

NameTypeAvailability
ESPPredictor
Determine which tryptic peptides will generate the highest signal in ESI-MS
Pdf  Version: 1
Proteomics * Public Server Only
QuaSAR
A suite of tools for QC, analysis and visualization of data from MRM-MS experiments including assay configuration, calibration curves and new sample analysis.
Pdf  Version: 1
Proteomics * Public Server Only
AreaChange
Calculates fraction of area under the spectrum that is attributable to signal (area after noise removal / original area)
Pdf  Version: 2
Proteomics Module Repository
AuDIT
Automated Detection of Inaccurate and Imprecise Transitions in MRM Mass Spectrometry
Html  Version: 6
Proteomics Module Repository
CompareSpectra
Compares two spectra to determine similarity
Pdf  Version: 3
Proteomics Module Repository
LandmarkMatch
A proteomics method to propogate identifed peptides across multiple MS runs
Pdf  Version: 2
Proteomics Module Repository
LocatePeaks
Locates detected peaks in a spectrum.
Pdf  Version: 2
Proteomics Module Repository
mzXMLToCsv
Converts a mzXML file to a zip of csv files
Pdf  Version: 1
Proteomics Module Repository
PeakMatch
Perform peak matching on LC-MS data
Pdf  Version: 2
Proteomics Module Repository
Peaks
Determine peaks in the spectrum using a series of digital filters.
Pdf  Version: 2
Proteomics Module Repository
PlotPeaks
Plot peaks
Pdf  Version: 2
Proteomics Module Repository
ProteoArray
LC-MS proteomic data processing module
Pdf  Version: 1
Proteomics Module Repository
ProteomicsAnalysis
Runs the proteomics analysis on the set of input spectra
Pdf  Version: 2
Proteomics Module Repository