GenePattern Modules

Modules in the repository can be installed on a local GenePattern server. Most of these modules are also installed on the public GenePattern server.

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NameTypeAvailability
ConsensusClustering
Resampling-based clustering method
Pdf  Version: 7
Clustering Module Repository
HierarchicalClustering.MATLAB
Hierarchical Clustering
Pdf  Version: 0
Clustering Module Repository
HierarchicalClustering
Hierarchical Clustering
Html  Version: 6
Clustering Module Repository
KMeansClustering
Module that performs the K-Means Clustering algorithm
Pdf  Version: 2
Clustering Module Repository
NMFConsensus
Non-negative Matrix Factorization (NMF) Consensus Clustering
Pdf  Version: 5
Clustering Module Repository
SOMClustering
Self-Organizing Maps algorithm
Pdf  Version: 2
Clustering Module Repository
SparseHierarchicalClustering
Cluster the samples in a data matrix using an adaptively-chosen subset of the features.
Pdf  Version: 1
Clustering Module Repository
SubMap
Maps subclasses between two data sets
Pdf  Version: 3
Clustering Module Repository
SubMapBrowser
Surveys all possible subclass mappings
Pdf  Version: 2
Clustering Module Repository