Integrated Pipeline and Graphical Environment. You can now create, view and edit pipelines all directly in the easy-to-use Java Client.
Automatic Pipeline Creation. In addition to building a pipeline step by step, you can now select a result file and automatically create the analysis pipeline that produced that file.
Module Suites. Suites are groups of modules that can be installed, edited, exported, and viewed as a unit. For example, the Clustering suite contains all GenePattern modules that perform clustering, and the Proteomics suite contains all proteomic-related modules. In installing (or exporting) a suite, you install (or export) all of the modules in that suite. The Java and Web clients provide a filter-by-suite capability, allowing you to view only those modules in the suites you are interested in.
Web Client redesign. The layout of the Web Client has been improved to make more frequent operations easier and to give easier access to previous analyses and result files.