Video Tutorials  

• Getting Started
  Learn to use the GenePattern public server by running differential expression analysis. (5 minutes)
• Converting Expression Data into a GenePattern Input File Format
  Learn to convert your expression data into a GCT or RES file for input into GenePattern. (4 minutes)
• GenePattern Pipelines: Creating a Workflow from a Series of Analysis Steps
  Learn to create a GenePattern pipeline from an analysis result file. (3 minutes)
• Imputing Missing Values in GenePattern
  Learn to impute missing values in a dataset using the ImputeMissingValuesKNN module. (3 minutes)
• Using GenePattern Protocols
  Learn how to perform common analyses in GenePattern using protocols. (4 minutes)
• Converting Between MAGE-TAB and GenePattern Expression File Formats
  Learn how to convert to and from the MAGE-TAB expression data format in GenePattern. (7 minutes)
• Converting Ilumina Expression Data Into the GenePattern GCT format
  Learn how to covert Illumina expression data into the GenePattern GCT format. (4 minutes)
• Using IGV through GenePattern (v2)
  Learn how to launch IGV from GenePattern to visualize your result files. (7 minutes)
• Importing Data from caArray to GenePattern
  Learn how to import data from caArray into GenePattern, using the caArray2.3.0Importer module. (4 minutes)
• Submitting Your Module to GParc
  Learn how to submit your GenePattern module to GParc, the GenePattern archive. (3 minutes)
• RNA-seq Quality Control (QC) in GenePattern
  Learn how to examine the content aligned RNA-seq data using common QC metrics in GenePattern. (10 minutes)
• Batch Execution in GenePattern 3.3.3
  Learn how to submit batch jobs from a set of input files in GenePattern 3.3.3. (4 minutes)
• Using the GenePattern Uploads Tab
  Learn how to upload and manage files in the Uploads tab in GenePattern. (4 minutes)
• Exporting Datasets from InsilicoDB to GenePattern
  Learn how to export a dataset from InsilicoDB and automatically import into GenePattern. (4 minutes)
• Exploring the New GenePattern Pipeline Designer
  This brief tutorial will demonstrate how to create and edit pipelines in GenePattern 3.4.0. (6 minutes)