Posted on Monday, September 22, 2014 at 03:26PM by Barbara Hill Meyers
On October 6, 2014, we will be making some changes to the way that data is stored for your account on genepattern.broadinstitute.
How can I tell how...
Posted on Thursday, September 18, 2014 at 04:52PM by Peter Carr
As a result of the software update on August 14, we modified the startup environment for the server. This was necessary because the server now requires Java 7. It was previously using Java 6. Surprisingly, this necessitated a change to the R configuration. You may notice slight changes to the behavior of your R modules. For example, the ATLANTISInputs module failed with this error message:
/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_3.0.2/lib64/R/bin/exec/R: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
The workaround is to change the command line for your R modules to use the preferred command line substitution parameter. For example, for an R 3.0 module use <R3.0_Rscript>. For an R 2.15 module use <R2.15_Rscript>.
Please contact us for further assistance. Thanks! Originally posted on gpbroad at 4pm on Monday Aug 25
Posted on Wednesday, July 23, 2014 at 12:56PM by GenePattern Team
GenePattern downtime 7/25 - 7/28: Because of systems maintenance at the Broad, the following job queue interruptions will take place between 5 PM on Friday, July 25 and 10 AM Monday, July 28.
Please feel free to contact us if you have any questions or concerns