Posted by David Eby on Wednesday, July 17, 2013 at 11:23AM
If this does not solve your visualizer issues, please consult our FAQ for some other known issues regarding visualizers and ComparativeMarkerSelectionViewer. This earlier blog posting deals with some issues in earlier versions of Java 6 and Java 7. Note also that we are currently in the process of updating our visualizers to be compatible with Java 7. Most have been updated, but Multiplot in particular is still being tested. We anticipate a Beta release shortly.
Posted by GenePattern Team on Thursday, May 30, 2013 at 02:11PM
GenePattern 3.6 contains several new features and fixes.
In GenePattern 3.6, the job submit page (the page that appears when you select a module or pipeline) has been revised for ease of use. The user interface has been streamlined with clearer drag--and-drop targets, updated buttons and other UI elements, and reorganized module information in the header.
We have improved file input to modules and pipelines in a number of ways:
We have implemented the ability to drag-and-drop/upload multiple files for a single module run; this provides an alternative to having to make a text file containing the absolute paths or URLs to each file, making it much easier to do a single module run on a set of files. These files can come from a direct upload, a previous job result, the GenomeSpace tab, or an external URL. This works for any module or pipeline that has file lists enabled.
The 3.6 release fixes issues in GenePattern, including:
Posted by David Eby on Friday, October 26, 2012 at 02:47PM
(Originally posted 2012-11-09)
Oracle recently released an update to their Java 6 platform which could cause problems for GenePattern users. The update disables the underlying technologies used by several of GenePattern components, specifically the visualization modules (such as ComparativeMarkerSelectionViewer and HeatMapViewer) and the file uploader. The GenePattern team is currently evaluating options to address this issue.