GenePattern Team Blog

GenePattern 3.9.4 is released!

Posted on Thursday, August 06, 2015 at 04:58PM by The GenePattern Team

GenePattern 3.9.4 is available for use on our Public GenePattern Server, via download, and as an Amazon Machine Image (AMI). The Release Notes give details on new features, fixes and modules released since June 23, 2015. These details include:

  • Default selection of production level modules over beta versions
  • Citation information on the main page of the server
  • Improved support for running GenePattern on Java 8
  • The installation of the latest version of MultiPlotStudio on our public servers.

Feel free to contact us with any questions or comments.


The GenePattern Team


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Java Certificate Expiration causes "Application Blocked by Security Settings" error - FIXED

Posted on Monday, June 22, 2015 at 03:16PM by Barbara Hill Meyers

June 23, 2015 1:00PM UPDATE: This issue has now been resolved. Please let us know if you continue to encounter issues with launching visualizers.


Our Java certificate recently expired, and we are now in the process of renewing it. During this time, visualizers will fail to launch, returning the following error:


If you encounter this error, you'll need to add the URL for the GenePattern server to your Java exceptions, as detailed on the Java site. The URL for the server can be found in the URL bar in the top of your browser. The URL you add to the exceptions list should look something like:

Once you have added the exception, you may need to refresh your window. You will then see a message like this when you attempt to launch a visualizer:

Click the Check Box next to "I accept the risk and want to run this application" (and optionally, via Show Options, choose to do this always for this provider). Then,...

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GenePattern Downtime this Weekend (6/14/15)

Posted on Friday, June 12, 2015 at 01:11PM by Barbara Hill Meyers

Please note that the following Broad-hosted GenePattern servers will be unavailable from 12pm Sunday, Ju (ne 14 - 12am Monday, June 15, 2015 for scheduled system maintenance: (available to internal Broad users only)

We will update this post when the maintenance is complete.

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