GenePattern is a powerful genomic analysis platform that provides access to more than 240 tools for gene expression analysis, proteomics, SNP analysis, flow cytometry, RNA-seq analysis, and common data processing tasks. A web-based interface provides easy access to these tools and allows the creation of multi-step analysis pipelines that enable reproducible in silico research.
The CopyNumberInferencePipeline is a method for analyzing your Affymetrix SNP6.0 data files in GenePattern. For more information, please view our online documentation.
Funded by the National Cancer Institute and the National Institute of General Medical Sciences.
Winner of the Editor's Choice award for the 2005 BioIT World Best Practices competition.