GenePattern is a powerful genomic analysis platform that provides access to more than 100 tools
for gene expression analysis, proteomics, SNP analysis and common data processing tasks. A web-based interface provides easy access to these tools and allows the creation of multi-step analysis pipelines that enable reproducible in silico research.
|
|
|
What's New
1/22/2010: The Microsoft® Word 2007 add-in for the GenePattern Reproducible Research Document (GRRD) is now available. Mesirov (Science, 327:415, 2010) mentions the add-in in a Policy Forum discussing the importance of making reproducibility easily accessible to nonprogramming users in the context of scientific manuscripts.
12/21/2009: The AuDIT module is now available on the GenePattern public server. Developed by Abbatiello et al. (Clinical Chemistry, In Press), AuDIT evaluates multiple reaction monitoring-mass spectrometry (MRM-MS) data to objectively identify inaccurate transition data and thus improve the overall accuracy of data analysis.
 11/9/2009: GenePattern 3.2.1 is now available. Run analyses on the Broad server or download GenePattern. This release includes support for Java 6. For more information, see the release notes.
10/15/2009: GenePattern video tutorials are now available.
9/18/2009: Cancer Outlier Profile Analysis (COPA) is now available on the GenePattern public server. An adaptation of the Bioconductor package (copa) by MacDonald (2006), the analysis can be used to identify recurrent chromosomal translocations in microarray data.
|
Citing GenePattern
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP GenePattern 2.0 Nature Genetics 38 no. 5 (2006): pp500-501
more...
|
|
