Please note that GENE-E is no longer supported. Please use my new web-based replacement, Morpheus.

GENE-E is a matrix visualization and analysis platform designed to support visual data exploration. It includes heat map, clustering, filtering, charting, marker selection, and many other tools. In addition to supporting generic matrices, GENE-E also contains tools that are designed specifically for genomics data. GENE-E was created and is developed by Joshua Gould. When referencing your use of GENE-E, please cite this website.

Java 7 is now required.
Integrate multiple data types in the same heat map view.
Concatenate rows and columns tools added.
Java and R APIs are available.