I am using the RNA-seqc to evaluate the quality of rna-seq data. The
pari-end data is mapped by Tophat with default parameter.
I am confused by duplication report, which says 100% for "unique rate of
mapped". Actually, there are many reads with "NH:i:3", suggesting three
Is this a bug in RNA-SEQC, or I understand the "unique rate of mapped" in
the wrong way?
RNA-SEQC version: V1.1.7