I am trying to replicate the mouse specific pipeline recently published in:
McFadden DG, Papagiannakopoulos T, Taylor-Weiner A, Stewart C, Carter SL, et al. (2014) Genetic and Clonal Dissectionof Murine Small Cell Lung Carcinoma Progression by Genome Sequencing. Cell 156: 1298–1311. doi:10.1016/j.cell.2014.02.031.
In it, they stated they have used dRanger to detect genomic rearrangements. However, it's seems not to be publicly available. Is this correct?
Thanks in advance.