mutSigCV input

Hi,

I am unsure if a TCGA .maf file is an required input format for mutSigCV or is it only the four columns listed on the help page: gene, patient, effect, categ?

Thanks.

Jessica Xin Hu

You can generate a MAF file

You can generate a MAF file from oncotator http://www.broadinstitute.org/oncotator/