CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
Creation of coverage file 0 1 year 27 weeks ago
by ramirob
n/a
MutSig 1.5 0 1 year 29 weeks ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 1 year 33 weeks ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 1 year 36 weeks ago
by shanbio
n/a
Coverage definition in MuSigCV 0 1 year 42 weeks ago
by yning
n/a
problems with MAF for MutSigCV 0 1 year 43 weeks ago
by adomingues
n/a
mutSig on targetted capture data ? 0 1 year 47 weeks ago
by anand_m_t
n/a
Problem with dRanger 0 1 year 48 weeks ago
by mangfu
n/a
MutSig CV No mutations left error. 0 2 years 6 weeks ago
by archakravarthy
n/a
Mutations droped out after running ABSOLUTE 0 2 years 9 weeks ago
by jzhang20
n/a
MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 2 years 23 weeks ago
by biotechnepal
n/a
Mutect - no variants found after chromosome 5 0 2 years 24 weeks ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 2 years 26 weeks ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 2 years 29 weeks ago
by Carla
n/a
SomaticIndelDetector 0 2 years 30 weeks ago
by erichpeterson
n/a
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 2 years 32 weeks ago
by davidwb7
n/a
TCGA protein change annotation 0 2 years 34 weeks ago
by mstewart
n/a
Where can I download Indelocator 0 2 years 36 weeks ago
by vang42
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MutSig preprocessing step: categ and effect 0 2 years 37 weeks ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 2 years 39 weeks ago
by igor
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maf -> oncotator format 0 2 years 39 weeks ago
by mrooney
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Questions on MutSig use 0 2 years 40 weeks ago
by fendou000
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ABSOLUTE - maf format 0 2 years 41 weeks ago
by jg
n/a
generating MutSig coverage file and omitting non-coding variants 0 2 years 41 weeks ago
by apatch
n/a
MutSig Preprocess error 0 2 years 44 weeks ago
by slg
n/a