CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
ContEst for sequencing data 0 3 weeks 1 day ago
by rebecca
n/a
ChainFinder pipeline 0 3 weeks 4 days ago
by andreasottoriva
n/a
Running D-ToxoG without a Matlab license 0 5 weeks 5 days ago
by jchellmuth
n/a
ABSOLUTE using Oncoscan copy number 0 10 weeks 2 days ago
by inodb
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dRanger 0 10 weeks 5 days ago
by sih
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D-ToxoG - where do I get reads pair orientation for the input files 0 15 weeks 3 days ago
by shai_rosenberg
n/a
Undefined function or variable "method" when categ>1? 0 21 weeks 3 days ago
by ramirob
n/a
MutsigCV - custom region coverage 0 22 weeks 2 days ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 22 weeks 2 days ago
by JamesPlatt
n/a
MutsigCV coverage file 0 22 weeks 2 days ago
by JamesPlatt
n/a
Can mutect run on multiple tumor samples? 0 31 weeks 3 days ago
by wenluo
n/a
Creation of coverage file 0 32 weeks 1 day ago
by ramirob
n/a
MutSig 1.5 0 34 weeks 4 days ago
by Anastaziel
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are 'reptime' and 'hic' columns necessary in covariates table? 0 38 weeks 1 day ago
by suyouhanhan
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BreakPointer:rearrangement_predictions file 0 41 weeks 2 days ago
by shanbio
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Coverage definition in MuSigCV 0 47 weeks 4 days ago
by yning
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problems with MAF for MutSigCV 0 48 weeks 2 days ago
by adomingues
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mutSig on targetted capture data ? 0 1 year 2 days ago
by anand_m_t
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Problem with dRanger 0 1 year 1 week ago
by mangfu
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MutSig CV No mutations left error. 0 1 year 11 weeks ago
by archakravarthy
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Mutations droped out after running ABSOLUTE 0 1 year 14 weeks ago
by jzhang20
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How to generate 'categ' field? 0 1 year 25 weeks ago
by subright
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MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 1 year 28 weeks ago
by biotechnepal
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Mutect - no variants found after chromosome 5 0 1 year 29 weeks ago
by salpie
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MutSigCV for non-cancerous samples 0 1 year 31 weeks ago
by asgarhussainigib
n/a