CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
Rescuing tumor in normal variants due to tissue-adjacent contamination 0 5 days 1 hour ago
by tbrunetti
n/a
RNA-SeQC GC stratification problem 0 8 weeks 1 day ago
by dusan_randjelovic
n/a
Extract the sample/gene background mutation calculation 0 9 weeks 3 days ago
by fgruber
n/a
What is the minimum sample number to run MutSigCV? 0 10 weeks 3 days ago
by yujun3315
n/a
License information of d-ToxoG 0 10 weeks 4 days ago
by shakuras
n/a
RNASeqc not work with hg38 gtf 0 11 weeks 3 days ago
by mpolano
n/a
How do I run Indelocator? 0 14 weeks 5 days ago
by vdionellis
n/a
MutSigCV mm9 0 17 weeks 2 days ago
by sophiespo
n/a
Picard ReorderSam 0 18 weeks 5 days ago
by lemelior
n/a
rnaseqc strange results 0 20 weeks 12 hours ago
by mpolano
n/a
MutSig_preprocess error 0 30 weeks 1 day ago
by farmer
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"Subscripted assignment dimension mismatch" error for web-based MutSig results 0 31 weeks 16 hours ago
by dreamerwu
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HAPSEG & ABSOLUTE : input from CytoScan HD and Oncoscan 0 32 weeks 1 day ago
by dumanoir
n/a
ABSOLUTE input 0 33 weeks 6 days ago
by vakulmohanty
n/a
MutSig error 0 40 weeks 3 days ago
by p_charoentong
n/a
ContEst for sequencing data 0 50 weeks 1 day ago
by rebecca
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ChainFinder pipeline 0 50 weeks 4 days ago
by andreasottoriva
n/a
Running D-ToxoG without a Matlab license 0 1 year 4 days ago
by jchellmuth
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ABSOLUTE using Oncoscan copy number 0 1 year 5 weeks ago
by inodb
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dRanger 0 1 year 5 weeks ago
by sih
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D-ToxoG - where do I get reads pair orientation for the input files 0 1 year 10 weeks ago
by shai_rosenberg
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Undefined function or variable "method" when categ>1? 0 1 year 16 weeks ago
by ramirob
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MutsigCV - custom region coverage 0 1 year 17 weeks ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 1 year 17 weeks ago
by JamesPlatt
n/a
MutsigCV coverage file 0 1 year 17 weeks ago
by JamesPlatt
n/a