CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
D-ToxoG - where do I get reads pair orientation for the input files 0 1 week 4 days ago
by shai_rosenberg
n/a
Undefined function or variable "method" when categ>1? 0 7 weeks 5 days ago
by ramirob
n/a
MutsigCV - custom region coverage 0 8 weeks 3 days ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 8 weeks 3 days ago
by JamesPlatt
n/a
MutsigCV coverage file 0 8 weeks 3 days ago
by JamesPlatt
n/a
Can mutect run on multiple tumor samples? 0 17 weeks 4 days ago
by wenluo
n/a
Creation of coverage file 0 18 weeks 2 days ago
by ramirob
n/a
MutSig 1.5 0 20 weeks 6 days ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 24 weeks 3 days ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 27 weeks 4 days ago
by shanbio
n/a
MutSig error 0 28 weeks 4 days ago
by nunu_ping
n/a
Coverage definition in MuSigCV 0 33 weeks 5 days ago
by yning
n/a
problems with MAF for MutSigCV 0 34 weeks 3 days ago
by adomingues
n/a
mutSig on targetted capture data ? 0 38 weeks 4 days ago
by anand_m_t
n/a
Problem with dRanger 0 39 weeks 5 days ago
by mangfu
n/a
MutSig CV No mutations left error. 0 49 weeks 2 days ago
by archakravarthy
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Mutations droped out after running ABSOLUTE 0 1 year 5 days ago
by jzhang20
n/a
How to generate 'categ' field? 0 1 year 11 weeks ago
by subright
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MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 1 year 14 weeks ago
by biotechnepal
n/a
Mutect - no variants found after chromosome 5 0 1 year 15 weeks ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 1 year 17 weeks ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 1 year 20 weeks ago
by Carla
n/a
SomaticIndelDetector 0 1 year 21 weeks ago
by erichpeterson
n/a
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 1 year 23 weeks ago
by davidwb7
n/a
TCGA protein change annotation 0 1 year 25 weeks ago
by mstewart
n/a