CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
Running D-ToxoG without a Matlab license 0 2 days 16 hours ago
by jchellmuth
n/a
ABSOLUTE using Oncoscan copy number 0 4 weeks 6 days ago
by inodb
n/a
dRanger 0 5 weeks 2 days ago
by sih
n/a
D-ToxoG - where do I get reads pair orientation for the input files 0 10 weeks 7 hours ago
by shai_rosenberg
n/a
Undefined function or variable "method" when categ>1? 0 16 weeks 10 hours ago
by ramirob
n/a
MutsigCV - custom region coverage 0 16 weeks 6 days ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 16 weeks 6 days ago
by JamesPlatt
n/a
MutsigCV coverage file 0 16 weeks 6 days ago
by JamesPlatt
n/a
Can mutect run on multiple tumor samples? 0 26 weeks 8 hours ago
by wenluo
n/a
Creation of coverage file 0 26 weeks 5 days ago
by ramirob
n/a
MutSig 1.5 0 29 weeks 1 day ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 32 weeks 5 days ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 35 weeks 6 days ago
by shanbio
n/a
Coverage definition in MuSigCV 0 42 weeks 1 day ago
by yning
n/a
problems with MAF for MutSigCV 0 42 weeks 6 days ago
by adomingues
n/a
mutSig on targetted capture data ? 0 46 weeks 6 days ago
by anand_m_t
n/a
Problem with dRanger 0 48 weeks 18 hours ago
by mangfu
n/a
MutSig CV No mutations left error. 0 1 year 5 weeks ago
by archakravarthy
n/a
Mutations droped out after running ABSOLUTE 0 1 year 9 weeks ago
by jzhang20
n/a
How to generate 'categ' field? 0 1 year 19 weeks ago
by subright
n/a
MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 1 year 23 weeks ago
by biotechnepal
n/a
Mutect - no variants found after chromosome 5 0 1 year 24 weeks ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 1 year 25 weeks ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 1 year 29 weeks ago
by Carla
n/a
SomaticIndelDetector 0 1 year 30 weeks ago
by erichpeterson
n/a