CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
Can mutect run on multiple tumor samples? 0 3 weeks 2 days ago
by wenluo
n/a
Creation of coverage file 0 4 weeks 11 hours ago
by ramirob
n/a
ABSOLUTE not generating plots 0 5 weeks 1 day ago
by mbark0
n/a
MutSig 1.5 0 6 weeks 3 days ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 10 weeks 19 hours ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 13 weeks 1 day ago
by shanbio
n/a
MutSig error 0 14 weeks 2 days ago
by nunu_ping
n/a
Coverage definition in MuSigCV 0 19 weeks 3 days ago
by yning
n/a
problems with MAF for MutSigCV 0 20 weeks 1 day ago
by adomingues
n/a
mutSig on targetted capture data ? 0 24 weeks 2 days ago
by anand_m_t
n/a
Problem with dRanger 0 25 weeks 2 days ago
by mangfu
n/a
MutSig CV No mutations left error. 0 35 weeks 9 hours ago
by archakravarthy
n/a
Mutations droped out after running ABSOLUTE 0 38 weeks 4 days ago
by jzhang20
n/a
MutSigFN and MutSigCL 0 40 weeks 2 days ago
by 李斌
n/a
How to generate 'categ' field? 0 49 weeks 1 day ago
by subright
n/a
MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 1 year 3 days ago
by biotechnepal
n/a
Mutect - no variants found after chromosome 5 0 1 year 1 week ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 1 year 3 weeks ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 1 year 6 weeks ago
by Carla
n/a
SomaticIndelDetector 0 1 year 7 weeks ago
by erichpeterson
n/a
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 1 year 9 weeks ago
by davidwb7
n/a
TCGA protein change annotation 0 1 year 10 weeks ago
by mstewart
n/a
Where can I download Indelocator 0 1 year 13 weeks ago
by vang42
n/a
MutSig preprocessing step: categ and effect 0 1 year 13 weeks ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 1 year 15 weeks ago
by igor
n/a