CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
MutSig error 0 1 week 4 days ago
by p_charoentong
n/a
ContEst for sequencing data 0 11 weeks 2 days ago
by rebecca
n/a
ChainFinder pipeline 0 11 weeks 5 days ago
by andreasottoriva
n/a
Running D-ToxoG without a Matlab license 0 14 weeks 5 hours ago
by jchellmuth
n/a
ABSOLUTE using Oncoscan copy number 0 18 weeks 3 days ago
by inodb
n/a
dRanger 0 18 weeks 6 days ago
by sih
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D-ToxoG - where do I get reads pair orientation for the input files 0 23 weeks 4 days ago
by shai_rosenberg
n/a
Undefined function or variable "method" when categ>1? 0 29 weeks 4 days ago
by ramirob
n/a
MutsigCV - custom region coverage 0 30 weeks 3 days ago
by JamesPlatt
n/a
MutsigCV coverage formatting requirements 0 30 weeks 3 days ago
by JamesPlatt
n/a
MutsigCV coverage file 0 30 weeks 3 days ago
by JamesPlatt
n/a
Can mutect run on multiple tumor samples? 0 39 weeks 4 days ago
by wenluo
n/a
Creation of coverage file 0 40 weeks 2 days ago
by ramirob
n/a
MutSig 1.5 0 42 weeks 6 days ago
by Anastaziel
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are 'reptime' and 'hic' columns necessary in covariates table? 0 46 weeks 3 days ago
by suyouhanhan
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BreakPointer:rearrangement_predictions file 0 49 weeks 4 days ago
by shanbio
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Coverage definition in MuSigCV 0 1 year 3 weeks ago
by yning
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problems with MAF for MutSigCV 0 1 year 4 weeks ago
by adomingues
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mutSig on targetted capture data ? 0 1 year 8 weeks ago
by anand_m_t
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Problem with dRanger 0 1 year 9 weeks ago
by mangfu
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MutSig CV No mutations left error. 0 1 year 19 weeks ago
by archakravarthy
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Mutations droped out after running ABSOLUTE 0 1 year 22 weeks ago
by jzhang20
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How to generate 'categ' field? 0 1 year 33 weeks ago
by subright
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MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 1 year 36 weeks ago
by biotechnepal
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Mutect - no variants found after chromosome 5 0 1 year 37 weeks ago
by salpie
n/a