CGA Tools Help Forum

TopicRepliesCreatedLast replysort icon
Welcome 0 3 years 35 weeks ago
by gsaksena2
n/a
Hi, Nice to meet you. 0 3 years 31 weeks ago
by hyunmin
n/a
questions on duplication rate by RNA-SEQC 1 3 years 26 weeks ago
by chunxuan
3 years 26 weeks ago
by ddeluca
Allele frequency from maf files 1 3 years 15 weeks ago
by dave.wettmann
3 years 15 weeks ago
by gsaksena
Running MutSig without a matlab licence 3 3 years 12 weeks ago
by cem45
3 years 9 weeks ago
by gsaksena
Error in RNA-seQC 0 3 years 8 weeks ago
by mdeloger
n/a
MCR installation error on linux 0 3 years 7 weeks ago
by Imbeaud
n/a
Status of Mutsig 2 3 years 7 weeks ago
by ddarcy
3 years 7 weeks ago
by gsaksena
Generate new maf file 4 3 years 9 weeks ago
by xunanfang
3 years 6 weeks ago
by xunanfang
MutSig Preprocess error 0 3 years 5 weeks ago
by slg
n/a
MutSig output features 1 3 years 6 weeks ago
by Imbeaud
3 years 5 weeks ago
by gsaksena
RNA-SeqQC support 1 3 years 5 weeks ago
by lletourn
3 years 4 weeks ago
by csb
MutSigCV Error List / Coverage file generation process 2 3 years 6 weeks ago
by davidwb7
3 years 3 weeks ago
by ersgupta
What columns are necessary in MAF for MutSigCV? 2 3 years 6 weeks ago
by MZimm
3 years 2 weeks ago
by fcaramia
generating MutSig coverage file and omitting non-coding variants 0 3 years 2 weeks ago
by apatch
n/a
ABSOLUTE - maf format 0 3 years 2 weeks ago
by jg
n/a
Questions on MutSig use 0 3 years 1 week ago
by fendou000
n/a
maf -> oncotator format 0 3 years 4 days ago
by mrooney
n/a
Error in RNAseqc 1 3 years 3 days ago
by saad khan
3 years 15 hours ago
by ersgupta
RNA-SeQC - rRNA BWA error 0 3 years 10 hours ago
by igor
n/a
MutSig preprocessing step: categ and effect 0 2 years 50 weeks ago
by hoondy
n/a
Where can I download Indelocator 0 2 years 49 weeks ago
by vang42
n/a
TCGA protein change annotation 0 2 years 47 weeks ago
by mstewart
n/a
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 2 years 45 weeks ago
by davidwb7
n/a
Errors on running ChainFinder 3 3 years 9 weeks ago
by apatch
2 years 44 weeks ago
by Annees