CGA Tools Help Forum

TopicRepliesCreatedsort iconLast reply
Welcome 0 2 years 17 weeks ago
by gsaksena2
n/a
Hi, Nice to meet you. 0 2 years 13 weeks ago
by hyunmin
n/a
questions on duplication rate by RNA-SEQC 1 2 years 8 weeks ago
by chunxuan
2 years 8 weeks ago
by ddeluca
Allele frequency from maf files 1 1 year 49 weeks ago
by dave.wettmann
1 year 49 weeks ago
by gsaksena
SomaticIndelDetector 2 1 year 48 weeks ago
by alexpenson
1 year 14 weeks ago
by vedellpt
Running MutSig without a matlab licence 3 1 year 46 weeks ago
by cem45
1 year 43 weeks ago
by gsaksena
Errors on running ChainFinder 3 1 year 43 weeks ago
by apatch
1 year 26 weeks ago
by Annees
Generate new maf file 4 1 year 43 weeks ago
by xunanfang
1 year 40 weeks ago
by xunanfang
Error in RNA-seQC 0 1 year 42 weeks ago
by mdeloger
n/a
Status of Mutsig 2 1 year 41 weeks ago
by ddarcy
1 year 41 weeks ago
by gsaksena
MCR installation error on linux 0 1 year 41 weeks ago
by Imbeaud
n/a
MutSig output features 1 1 year 40 weeks ago
by Imbeaud
1 year 39 weeks ago
by gsaksena
What columns are necessary in MAF for MutSigCV? 2 1 year 40 weeks ago
by MZimm
1 year 36 weeks ago
by fcaramia
MutSigCV Error List / Coverage file generation process 2 1 year 40 weeks ago
by davidwb7
1 year 37 weeks ago
by ersgupta
silent and nonsilent rates are too different 3 1 year 39 weeks ago
by tgong
1 year 2 weeks ago
by gsaksena
MutSig Preprocess error 0 1 year 39 weeks ago
by slg
n/a
RNA-SeqQC support 1 1 year 39 weeks ago
by lletourn
1 year 38 weeks ago
by csb
MutSig- genes that lack coverage information 1 1 year 37 weeks ago
by Omer Zuqert
1 year 18 weeks ago
by biotechnepal
MutSig Invalid field error 4 1 year 36 weeks ago
by fcaramia
1 year 16 weeks ago
by msjustu40
generating MutSig coverage file and omitting non-coding variants 0 1 year 36 weeks ago
by apatch
n/a
ABSOLUTE - maf format 0 1 year 36 weeks ago
by jg
n/a
Questions on MutSig use 0 1 year 35 weeks ago
by fendou000
n/a
maf -> oncotator format 0 1 year 34 weeks ago
by mrooney
n/a
Error in RNAseqc 1 1 year 34 weeks ago
by saad khan
1 year 34 weeks ago
by ersgupta
using ABSOLUTE for sequencing data 2 1 year 34 weeks ago
by yil8
11 weeks 5 days ago
by feis@ohsu.edu