CGA Tools Help Forum

TopicRepliesCreatedLast replysort icon
SomaticIndelDetector 2 2 years 37 weeks ago
by alexpenson
2 years 2 weeks ago
by vedellpt
How to generate 'categ' field? 0 2 years 4 weeks ago
by subright
n/a
No response about ABSOLUTE access 2 2 years 12 weeks ago
by kanwarjag
2 years 4 weeks ago
by gsaksena2
MutSig Invalid field error 4 2 years 25 weeks ago
by fcaramia
2 years 5 weeks ago
by msjustu40
MutSig- genes that lack coverage information 1 2 years 26 weeks ago
by Omer Zuqert
2 years 7 weeks ago
by biotechnepal
MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 2 years 7 weeks ago
by biotechnepal
n/a
Mutect - no variants found after chromosome 5 0 2 years 8 weeks ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 2 years 10 weeks ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 2 years 13 weeks ago
by Carla
n/a
mutSigCV input 1 2 years 16 weeks ago
by jxhu
2 years 13 weeks ago
by Carla
SomaticIndelDetector 0 2 years 14 weeks ago
by erichpeterson
n/a
Errors on running ChainFinder 3 2 years 32 weeks ago
by apatch
2 years 15 weeks ago
by Annees
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 2 years 16 weeks ago
by davidwb7
n/a
TCGA protein change annotation 0 2 years 17 weeks ago
by mstewart
n/a
MutSigCV error "not enough mutations to analyze" 2 2 years 21 weeks ago
by slg
2 years 20 weeks ago
by slg
Where can I download Indelocator 0 2 years 20 weeks ago
by vang42
n/a
MutSig preprocessing step: categ and effect 0 2 years 20 weeks ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 2 years 22 weeks ago
by igor
n/a
Error in RNAseqc 1 2 years 23 weeks ago
by saad khan
2 years 22 weeks ago
by ersgupta
maf -> oncotator format 0 2 years 23 weeks ago
by mrooney
n/a
Questions on MutSig use 0 2 years 23 weeks ago
by fendou000
n/a
ABSOLUTE - maf format 0 2 years 25 weeks ago
by jg
n/a
generating MutSig coverage file and omitting non-coding variants 0 2 years 25 weeks ago
by apatch
n/a
What columns are necessary in MAF for MutSigCV? 2 2 years 29 weeks ago
by MZimm
2 years 25 weeks ago
by fcaramia
MutSigCV Error List / Coverage file generation process 2 2 years 29 weeks ago
by davidwb7
2 years 26 weeks ago
by ersgupta