CGA Tools Help Forum

TopicRepliesCreatedLast replysort icon
SomaticIndelDetector 0 1 year 43 weeks ago
by erichpeterson
n/a
Errors on running ChainFinder 3 2 years 9 weeks ago
by apatch
1 year 45 weeks ago
by Annees
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 1 year 45 weeks ago
by davidwb7
n/a
TCGA protein change annotation 0 1 year 47 weeks ago
by mstewart
n/a
MutSigCV error "not enough mutations to analyze" 2 1 year 51 weeks ago
by slg
1 year 49 weeks ago
by slg
Where can I download Indelocator 0 1 year 49 weeks ago
by vang42
n/a
MutSig preprocessing step: categ and effect 0 1 year 50 weeks ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 2 years 1 day ago
by igor
n/a
Error in RNAseqc 1 2 years 5 days ago
by saad khan
2 years 2 days ago
by ersgupta
maf -> oncotator format 0 2 years 5 days ago
by mrooney
n/a
Questions on MutSig use 0 2 years 1 week ago
by fendou000
n/a
ABSOLUTE - maf format 0 2 years 2 weeks ago
by jg
n/a
generating MutSig coverage file and omitting non-coding variants 0 2 years 2 weeks ago
by apatch
n/a
What columns are necessary in MAF for MutSigCV? 2 2 years 6 weeks ago
by MZimm
2 years 2 weeks ago
by fcaramia
MutSigCV Error List / Coverage file generation process 2 2 years 6 weeks ago
by davidwb7
2 years 3 weeks ago
by ersgupta
RNA-SeqQC support 1 2 years 5 weeks ago
by lletourn
2 years 4 weeks ago
by csb
MutSig output features 1 2 years 6 weeks ago
by Imbeaud
2 years 5 weeks ago
by gsaksena
MutSig Preprocess error 0 2 years 5 weeks ago
by slg
n/a
Generate new maf file 4 2 years 9 weeks ago
by xunanfang
2 years 6 weeks ago
by xunanfang
Status of Mutsig 2 2 years 7 weeks ago
by ddarcy
2 years 7 weeks ago
by gsaksena
MCR installation error on linux 0 2 years 7 weeks ago
by Imbeaud
n/a
Error in RNA-seQC 0 2 years 8 weeks ago
by mdeloger
n/a
Running MutSig without a matlab licence 3 2 years 12 weeks ago
by cem45
2 years 9 weeks ago
by gsaksena
Allele frequency from maf files 1 2 years 16 weeks ago
by dave.wettmann
2 years 15 weeks ago
by gsaksena
questions on duplication rate by RNA-SEQC 1 2 years 26 weeks ago
by chunxuan
2 years 26 weeks ago
by ddeluca