CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
MutsigCV coverage formatting requirements 0 1 year 25 weeks ago
by JamesPlatt
n/a
MutsigCV coverage file 0 1 year 25 weeks ago
by JamesPlatt
n/a
Can mutect run on multiple tumor samples? 0 1 year 34 weeks ago
by wenluo
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Creation of coverage file 0 1 year 34 weeks ago
by ramirob
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MutSig 1.5 0 1 year 37 weeks ago
by Anastaziel
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are 'reptime' and 'hic' columns necessary in covariates table? 0 1 year 41 weeks ago
by suyouhanhan
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BreakPointer:rearrangement_predictions file 0 1 year 44 weeks ago
by shanbio
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Coverage definition in MuSigCV 0 1 year 50 weeks ago
by yning
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problems with MAF for MutSigCV 0 1 year 51 weeks ago
by adomingues
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mutSig on targetted capture data ? 0 2 years 3 weeks ago
by anand_m_t
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Problem with dRanger 0 2 years 4 weeks ago
by mangfu
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MutSig CV No mutations left error. 0 2 years 13 weeks ago
by archakravarthy
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Mutations droped out after running ABSOLUTE 0 2 years 17 weeks ago
by jzhang20
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MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 2 years 31 weeks ago
by biotechnepal
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Mutect - no variants found after chromosome 5 0 2 years 32 weeks ago
by salpie
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MutSigCV for non-cancerous samples 0 2 years 34 weeks ago
by asgarhussainigib
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How to make plots from MutSig 0 2 years 37 weeks ago
by Carla
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SomaticIndelDetector 0 2 years 38 weeks ago
by erichpeterson
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MutSigCV-compatible coverage file from MuTect Wiggle file output 0 2 years 40 weeks ago
by davidwb7
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TCGA protein change annotation 0 2 years 41 weeks ago
by mstewart
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Where can I download Indelocator 0 2 years 44 weeks ago
by vang42
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MutSig preprocessing step: categ and effect 0 2 years 44 weeks ago
by hoondy
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RNA-SeQC - rRNA BWA error 0 2 years 46 weeks ago
by igor
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maf -> oncotator format 0 2 years 47 weeks ago
by mrooney
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Questions on MutSig use 0 2 years 48 weeks ago
by fendou000
n/a