CGA Tools Help Forum

TopicRepliessort iconCreatedLast reply
Can mutect run on multiple tumor samples? 0 1 year 30 weeks ago
by wenluo
n/a
Creation of coverage file 0 1 year 31 weeks ago
by ramirob
n/a
MutSig 1.5 0 1 year 34 weeks ago
by Anastaziel
n/a
are 'reptime' and 'hic' columns necessary in covariates table? 0 1 year 37 weeks ago
by suyouhanhan
n/a
BreakPointer:rearrangement_predictions file 0 1 year 40 weeks ago
by shanbio
n/a
Coverage definition in MuSigCV 0 1 year 47 weeks ago
by yning
n/a
problems with MAF for MutSigCV 0 1 year 47 weeks ago
by adomingues
n/a
mutSig on targetted capture data ? 0 1 year 51 weeks ago
by anand_m_t
n/a
Problem with dRanger 0 2 years 6 days ago
by mangfu
n/a
MutSig CV No mutations left error. 0 2 years 10 weeks ago
by archakravarthy
n/a
Mutations droped out after running ABSOLUTE 0 2 years 14 weeks ago
by jzhang20
n/a
MutSigCV error mutation_type_dictionary_file.txt.test.txt is not writeable? 0 2 years 28 weeks ago
by biotechnepal
n/a
Mutect - no variants found after chromosome 5 0 2 years 29 weeks ago
by salpie
n/a
MutSigCV for non-cancerous samples 0 2 years 30 weeks ago
by asgarhussainigib
n/a
How to make plots from MutSig 0 2 years 33 weeks ago
by Carla
n/a
SomaticIndelDetector 0 2 years 35 weeks ago
by erichpeterson
n/a
MutSigCV-compatible coverage file from MuTect Wiggle file output 0 2 years 36 weeks ago
by davidwb7
n/a
TCGA protein change annotation 0 2 years 38 weeks ago
by mstewart
n/a
Where can I download Indelocator 0 2 years 40 weeks ago
by vang42
n/a
MutSig preprocessing step: categ and effect 0 2 years 41 weeks ago
by hoondy
n/a
RNA-SeQC - rRNA BWA error 0 2 years 43 weeks ago
by igor
n/a
maf -> oncotator format 0 2 years 44 weeks ago
by mrooney
n/a
Questions on MutSig use 0 2 years 44 weeks ago
by fendou000
n/a
ABSOLUTE - maf format 0 2 years 45 weeks ago
by jg
n/a
generating MutSig coverage file and omitting non-coding variants 0 2 years 46 weeks ago
by apatch
n/a